Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43650 319 / 6e-108 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 255 / 1e-82 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 191 / 2e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 186 / 2e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 184 / 1e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 183 / 1e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 182 / 3e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 182 / 4e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 174 / 7e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 170 / 2e-49 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028585 [exp] 625 / 0 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028586 [exp] 469 / 4e-163 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018890 [exp] 271 / 3e-90 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 203 / 1e-61 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 205 / 3e-61 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 201 / 5e-61 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 198 / 7e-60 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 197 / 2e-59 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033510 [exp] 192 / 3e-58 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 353 / 9e-121 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 347 / 2e-118 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.019G004100 [exp] 241 / 4e-77 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 234 / 3e-74 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 217 / 2e-67 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 198 / 4e-60 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 194 / 2e-58 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148600 [exp] 187 / 1e-56 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 189 / 2e-56 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 184 / 8e-55 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10018889 pacid=23144663 polypeptide=Lus10018889 locus=Lus10018889.g ID=Lus10018889.BGIv1.0 annot-version=v1.0 ATGGAAACACATAAACCTTACACAGCAATGCTACTAGTACAAATAATATATGCAGGAATGGCTTTGTTCTCCAAAGCAGCCATCTCTGGAGAACAAGGAA TGAACTCTTACATCTTCGTTACTTATCGTCAGGCTTTCGCAACGATTGCATTGGCTCCATTTGCCCTCTTCATCAAAAGTGAAAAGGCAGTTCCTTTGTC ATCCAAGGTTCTTCTCAAGATCTTCGTCATCTCCTTCATTGGGCTGGCCATGAGCTTGAACCTTTACTATATAGCAATCAACTACACAACCGCAACTTTT GCTGCAGCAACCACTAATGTGATTCCTGCCATAACCTTCACAATGGCTCTCCTCTTCAGGATGGAGAGGCTGTCAATAAGGAAAGTTCATGGGATTGCCA AAGTAGTTGGCTCTATGATTGGTGTTTCAGGAGCACTTGTGTTTGCACTTGTGAAGGGTCCTGTTCTATTAAACAAACCGGAATCGTCGAATCCTGACCA TCATCAGGAACTGGATTGGATCAAGGGCTCTCTGATCATGATCTTAGCTAACACACTTTGGTCACTGTGGGTTGTTCTTCAGGGAAGGATTGTGAAGGAA TATCCAGCTAAGGTGAGGCTAACAACTTTACAATGTGCATTCAGCTGCATACAATCAGCAGTTGCAGCAGCTGTCATGAACAAGGATGTTTCTGCTTGGA AACTTGGATTGAATGTTCATCTTTACTCTGTTGCCTACTGTGGAGTGTTGGTGACAGCATTAACATATTGGCTACAGCTTTGGACAATACAGAGGAAAGG ACCAGTTTTCACTGCAATCTTCACACCTTTGGCTCTTATCATCACTGCCATTTTCTCTTCTCTGGTTTGGCATGAAGTCCTCTACATTGGAAGTGTTGGT GGCACAGTTTTGTTGGTGGTTGGTCTCTACTTGGTGTTGTGGGGCAAAAACAAGGAAGAAAGAACACAAATTGGATTCAATGGGAAGATCATTAGCAATG AAGAAGAAGGCAAAACAACACCAAATCATTCTAAGGAAGAAATATCTGAAACAGAGTGTACTATACACATAAGTACTTAG
AA sequence Show only first row Show all	>Lus10018889 pacid=23144663 polypeptide=Lus10018889 locus=Lus10018889.g ID=Lus10018889.BGIv1.0 annot-version=v1.0 METHKPYTAMLLVQIIYAGMALFSKAAISGEQGMNSYIFVTYRQAFATIALAPFALFIKSEKAVPLSSKVLLKIFVISFIGLAMSLNLYYIAINYTTATF AAATTNVIPAITFTMALLFRMERLSIRKVHGIAKVVGSMIGVSGALVFALVKGPVLLNKPESSNPDHHQELDWIKGSLIMILANTLWSLWVVLQGRIVKE YPAKVRLTTLQCAFSCIQSAVAAAVMNKDVSAWKLGLNVHLYSVAYCGVLVTALTYWLQLWTIQRKGPVFTAIFTPLALIITAIFSSLVWHEVLYIGSVG GTVLLVVGLYLVLWGKNKEERTQIGFNGKIISNEEEGKTTPNHSKEEISETECTIHIST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	2.4	0.9368
AT5G42710			unknown protein		Lus10010806 [exp]	2.6	0.9392
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	4.0	0.9292
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	5.5	0.9127
					Lus10031340 [exp]	5.7	0.9109
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	6.2	0.9359
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	7.3	0.9283
AT1G22060			unknown protein		Lus10037927 [exp]	9.5	0.9065
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	10.0	0.8794
AT3G01810			unknown protein		Lus10015805 [exp]	10.6	0.9164

Compare expression of checked genes

Lus10018889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.