Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43650 174 / 5e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 150 / 1e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 103 / 1e-25 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 103 / 1e-25 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 102 / 2e-25 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 101 / 6e-25 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 98 / 9e-24 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 97 / 3e-23 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 92 / 2e-21 WAT1 Walls Are Thin 1 (.1.2) AT4G08300 92 / 2e-21 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028586 [exp] 306 / 3e-101 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018889 [exp] 233 / 9e-76 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028585 [exp] 228 / 7e-74 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10033510 [exp] 136 / 3e-38 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 113 / 3e-29 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 110 / 3e-28 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 110 / 1e-27 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 108 / 2e-27 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 107 / 3e-27 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 207 / 2e-65 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 206 / 4e-65 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.019G004100 [exp] 148 / 8e-43 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 145 / 9e-42 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148600 [exp] 139 / 1e-39 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 129 / 3e-35 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 114 / 1e-29 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 106 / 7e-27 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 106 / 1e-26 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 103 / 6e-26 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10018890 pacid=23144755 polypeptide=Lus10018890 locus=Lus10018890.g ID=Lus10018890.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTGTCTGTAAGGAAGGTTCACGGAATGGTGAAGATAGTTGGCTCGGTCGTTGGGGTTTCGGGAGCACTCGTGTTTGCCCTTGTGAAGGGAC CGGCTCTAGTTAATAATCATGATGATTCTTCATCGAAACATGTTCCTCTTAAAGATTTCTGTTCAAGGGGAGATTGGATTAAGGGTTCTCTTGTGATGAT CTTAGCCAACACCCTTTGGTCCTTGTGGCTTGTTCTCCAGAGTCGAATAGTGACACAATATCCAGCGAAAGTCCGGTTCACCACAATACAATGTGTATTC AGCTGCATGCAATCAACTCTTGTAGCAGTTGTCTTGGATAGGGATGCTTCGGCTTGGAAACTCGGGTGGAACATTCATCTTTTCTCCGTCGCCTACTGTG GAGTGATAGTGACAGCCCTAACATATTGGCTTCAACTATGGGCTATACAGAAGAAAGGACCCGTTTTCGCAGCAATGTTCACTCCCTTGGCACTAATTGT AGCTGCAGTTTTCTCAGCAATTGTTTGGAAAGAAATTCTTTACCTAGGAAGTGTAGGTGGGGCTGTTTTGCTGGTTGGTGGGCTCGATTTGGTGATATGG GGAAGAACGAGGAAGAAAGACAACAAAGCAAATCCAATGGTAGGATCAGTAATCAAGACATGGAATCAGGATCTGAGTTGTAGAATCTTAAGACGAAAGA TCCACCGTAAGAGAGTGCAATAG
AA sequence Show only first row Show all	>Lus10018890 pacid=23144755 polypeptide=Lus10018890 locus=Lus10018890.g ID=Lus10018890.BGIv1.0 annot-version=v1.0 MERLSVRKVHGMVKIVGSVVGVSGALVFALVKGPALVNNHDDSSSKHVPLKDFCSRGDWIKGSLVMILANTLWSLWLVLQSRIVTQYPAKVRFTTIQCVF SCMQSTLVAVVLDRDASAWKLGWNIHLFSVAYCGVIVTALTYWLQLWAIQKKGPVFAAMFTPLALIVAAVFSAIVWKEILYLGSVGGAVLLVGGLDLVIW GRTRKKDNKANPMVGSVIKTWNQDLSCRILRRKIHRKRVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018890 [exp]	0	1
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	5.1	0.6739
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	8.1	0.6676
					Lus10011766 [exp]	9.3	0.6537
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	12.3	0.6536
					Lus10012495 [exp]	12.5	0.6468
					Lus10021893 [exp]	13.5	0.6415
					Lus10000882 [exp]	13.8	0.6510
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	17.9	0.6295
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	19.0	0.6295
					Lus10035508 [exp]	20.0	0.6295

Compare expression of checked genes

Lus10018890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.