Plant FIBer expression Database

Lus10018891 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16710 258 / 4e-89 glycosyltransferase family protein 28 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028587
[exp]
360 / 2e-129 AT4G16710 263 / 5e-91 glycosyltransferase family protein 28 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G036500
[exp]
283 / 8e-99 AT4G16710 253 / 4e-87 glycosyltransferase family protein 28 (.1.2)
Potri.013G025600
[exp]
276 / 5e-96 AT4G16710 247 / 1e-84 glycosyltransferase family protein 28 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF04101 Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain
Representative CDS sequence
>Lus10018891 pacid=23144684 polypeptide=Lus10018891 locus=Lus10018891.g ID=Lus10018891.BGIv1.0 annot-version=v1.0
ATGGCAGAAACCGATCAGAAGAAGAAGAAAATGGTGTTTGTGACAGTGGGAACAACACTGTTCGATGCTCTGGTTAGAGCTGTGGATACCGAACAAGTGA
AGCGAGAATTGTCTCGAAGAGGATATACCCACCTTCTTATTCAAATCGGCCGTGGATCCTACCTTCCCCAGAAGTGCAAAGGAGATGAAGATGGATCTCT
TTCAGTTGATTACTTCACTTTCTCGTCAAGCATTGCCGACCATCTGAGAGCTGCATCTCTTGTCATCAGTCATGCTGGGTCAGGGAGCATATTTGAGACA
TTGCGGCTCGGGAAACCTCTAATTGTAGTGGTAAATGAAGATTTGATGGATAACCATCAGTGTGAACTTGCAGAAGAGCTAGCTGAAAGGAATCATCTGT
ACTGTACTCGTCCTCACACACTGCATAAGACGATCACGGATATGACGTTGGAGTATCTTCTTCCGTACCCTGCAGGTGATGCCAAACCCGTGATTCATTT
AATAAACCGATTTCTAGGTTTCCCAGATGACTGA
AA sequence
>Lus10018891 pacid=23144684 polypeptide=Lus10018891 locus=Lus10018891.g ID=Lus10018891.BGIv1.0 annot-version=v1.0
MAETDQKKKKMVFVTVGTTLFDALVRAVDTEQVKRELSRRGYTHLLIQIGRGSYLPQKCKGDEDGSLSVDYFTFSSSIADHLRAASLVISHAGSGSIFET
LRLGKPLIVVVNEDLMDNHQCELAEELAERNHLYCTRPHTLHKTITDMTLEYLLPYPAGDAKPVIHLINRFLGFPDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16710 glycosyltransferase family pro... Lus10018891
[exp]
0 1
AT1G16810 unknown protein Lus10033383
[exp]
6.5 0.8198
AT5G11500 unknown protein Lus10038625
[exp]
11.1 0.8072
AT2G29540 ATRPAC14, ATRPC... RNApolymerase 14 kDa subunit (... Lus10040717
[exp]
14.3 0.7983
AT1G52540 Protein kinase superfamily pro... Lus10023130
[exp]
39.7 0.7731
AT4G13520 SMAP1 small acidic protein 1 (.1) Lus10004400
[exp]
42.3 0.7586
AT1G16560 Per1-like family protein (.1.2... Lus10031187
[exp]
43.5 0.7467
AT5G14680 Adenine nucleotide alpha hydro... Lus10014545
[exp]
44.4 0.7648
AT3G59990 MAP2B methionine aminopeptidase 2B (... Lus10010592
[exp]
46.2 0.7797
AT3G12480 CCAAT NF-YC11 "nuclear factor Y, subunit C11... Lus10024082
[exp]
47.2 0.7792
AT1G48170 unknown protein Lus10011844
[exp]
47.5 0.7668

Lus10018891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.