Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76920 358 / 1e-122 F-box family protein (.1) AT5G15710 44 / 9e-05 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028591 [exp] 394 / 2e-139 AT1G76920 281 / 5e-95 F-box family protein (.1) Lus10035147 [exp] 47 / 2e-05 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 45 / 9e-05 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069900 [exp] 374 / 6e-129 AT1G76920 496 / 1e-176 F-box family protein (.1) Potri.005G190400 [exp] 362 / 5e-124 AT1G76920 531 / 0.0 F-box family protein (.1) Potri.004G112400 [exp] 46 / 3e-05 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018896 pacid=23144695 polypeptide=Lus10018896 locus=Lus10018896.g ID=Lus10018896.BGIv1.0 annot-version=v1.0 ATGACCCACCCCCCCCACGACACGCTCCACCAGATCTTCTCCACACTCCCCCTCCGCCAAATCGCCGCCGCCCGATCCGTCTGCAGATTCCTCCACCAAA CCCTGACCTCCCCTTCCTTCCTCTCCCTCCTCTCTACCTCCCAACCCCCTCTCTCCCTCCTCGCCCTCCGCCCACCTCCCACTCACCACCTCCTCCGCCT CCCTTCCCCTCCCCCGCCGTCCTTCCCCGCCTTCGACCCCTCCCTCCGCCTCTGGCTCACCTTCCCCCTCTCCTTCCTCCCCTTCCGAAACCTCCTCCCC GTCGCCTCCTCCTCCGGCTTAATCTACCTCTGGTCCTCCTCCGATTCATCCTCCGCCAAGTCTCTCATCGCCTGCAACCCGTTGACCCGCCAATACACCA TCCTCCCTCATCTCGGCTCCGCCTGGTCCCGCCATGGCGCCGTTTTATCCGACTCGGGTCGGGTCATCGTCTTAATGGAACCCGCCGCTGCTCTCTACTC CCCTAACTCAACCTCCTGGGTAACCTTCGCTTCCAATCTCCCTTCCAAACCCCGTTCCCCTGTTTTCATCAAAGATTCCCTTTTTGCCCTTTGCGACGTT GGATCCCCCTGGCGATCCCACTGGAAACTCTTCACCTGTCCTCTCAGTGATCATAACAGCTGGGTTTGCTTGGAGAAGAATGAGTGGGCGGACATATTCG ATCTGATTAAGCGGCCGAGGTTGGTGAGGGGGAAGGGGAGGAACAAGCTGCTGATGATCGGGGGATTGAAGTCGACGTTCTCGTTGAACACGACGTGTTC GACAATGCTGATACTGCGGCTGGATTTGGAGAAGCTGGAGTGGGAGGAGGCTGGGAGGATGCCTGTGGAGATGTACAGGTGTTTTGTTGAGTCGAGTAAG CTGAAGGTGTTTGGGGATGGTGATAAGGTTTGCTTCTCGGCGAAACGAGTTGGGAAGCTGGCGTTGTGGGATGGTGAGGAGGATGAAGGGAATGGTGGCG AGGTTTGGAGGTGGATTGATGGTGTTCCTGGTACTGGTGATGGGATTTGCAGAGGGTTTATCTATGACGCTACGCTCACTGCTTCAGCTTGA
AA sequence Show only first row Show all	>Lus10018896 pacid=23144695 polypeptide=Lus10018896 locus=Lus10018896.g ID=Lus10018896.BGIv1.0 annot-version=v1.0 MTHPPHDTLHQIFSTLPLRQIAAARSVCRFLHQTLTSPSFLSLLSTSQPPLSLLALRPPPTHHLLRLPSPPPPSFPAFDPSLRLWLTFPLSFLPFRNLLP VASSSGLIYLWSSSDSSSAKSLIACNPLTRQYTILPHLGSAWSRHGAVLSDSGRVIVLMEPAAALYSPNSTSWVTFASNLPSKPRSPVFIKDSLFALCDV GSPWRSHWKLFTCPLSDHNSWVCLEKNEWADIFDLIKRPRLVRGKGRNKLLMIGGLKSTFSLNTTCSTMLILRLDLEKLEWEEAGRMPVEMYRCFVESSK LKVFGDGDKVCFSAKRVGKLALWDGEEDEGNGGEVWRWIDGVPGTGDGICRGFIYDATLTASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	0	1
AT4G19950			unknown protein		Lus10038358 [exp]	1.4	0.9162
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	1.7	0.8993
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	2.8	0.9042
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	3.9	0.8776
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	6.0	0.8708
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	6.3	0.8639
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	6.9	0.8825
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	7.4	0.8560
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	7.5	0.8656
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	8.8	0.8544

Compare expression of checked genes

Lus10018896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.