Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 962 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G43710 792 / 0 EMB1075 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G18750 555 / 2e-179 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 534 / 4e-172 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 514 / 8e-165 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 506 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 506 / 2e-161 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 498 / 3e-159 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 496 / 2e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 496 / 7e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028593 [exp] 1354 / 0 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028592 [exp] 965 / 0 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017446 [exp] 561 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 540 / 1e-172 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 531 / 4e-169 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 525 / 1e-168 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 534 / 2e-166 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 528 / 2e-164 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 513 / 2e-164 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041200 [exp] 1139 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G190500 [exp] 839 / 0 AT1G43710 811 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G069800 [exp] 822 / 0 AT1G43710 790 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G059400 [exp] 553 / 3e-178 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 549 / 1e-177 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 547 / 6e-177 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 538 / 6e-174 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 528 / 1e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G040100 [exp] 519 / 3e-167 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 514 / 7e-165 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018897 pacid=23144691 polypeptide=Lus10018897 locus=Lus10018897.g ID=Lus10018897.BGIv1.0 annot-version=v1.0 ATGCTGCTCCGATCTCCCAAACTACTAACCCAGATACGCCGACGACGACGAAGTAGAATATTCCTTTCCACCGATTTCACCATCGCCGCCGCTCTTCCTC CACCTCCACCTCCGCTGTGCCCGACACTCCTCAAACACTGCAAATCCTTACACCAAGCGAACCTCATCCACCAGCAATCCCTAATCCATTCCGTAAATAC CCATTTCTCAATTCACCTAATCTCCACCTACATCGCCCTCGATGGCCCCTCTTTCGCCCTTTCGCTCCTCCAATCTCTCGATCCATCTCCCTTCCTCGTC TTCTGGTGGAACGCCCTCATCCGCCGCGCTCTCCATCTGGGACAGCTGGAACACTCCTTCTCTCTATTCTGCAGGATGATCCGCCTCGGATGGTCTCCTG ATCACTATACTCTCCCCTTCGTCCTCAAAGCCTCCGGCGAGCTCCCGTCCTTCTCCCGCGGCAGTTCGGTTCATTGTGTTGTCGTGAAGTATGGATTCGA ATCGAATGTGTTTGTTTGTAATGCCGCCGTCTCGGTTTATGGCAGGTGTGGCCGGATGGATTGTGCACGGCAGGTGTTCGACGAAATGTGTGAAAGAGAG GTGGTTGACTTGGTGTCGTGGAATTCCATCGCCGCGGCTTATATCCAAAATTCAGATATGCAAGGTGCGGTTTCGTTGTTTCGTAGGATGATGAGGACCA ATGGTGCTGATGATTCCAGGATTCGAGCTGATGCTGTAAGCATTGTGAATGTTTTGCCAGCTTGTGCTTCTCTTAAGCTATGGTTGCAGGGTAAGGAAGT GCATTGCTTTGCTATCCGAAGTGGACTATTTCACGACGTTTTCGTTGGTAATTCGTTGGTCGATCTCTACGCAAAAGGCGGGCTAATGAACGAGGCGAGC AAGGTTTTCGATCTTATGTTGGAGAAAGATGTGGTCTCTTGGAATGCTATGGTAACCGGTTACGCACAGAGCGGCCAATTTGAATCTGCTCTTGCCTTGT TCGAGAAAATGAAGGAAGATGAAATCGATCTGGATGTTGTCTCGTGGAGTGCTGTAATCGCTGGCTATGCACAGAGAGGGCTTGGAATCGAAGCATTGGA TACGTTCAGGCAAATGATTGTTTACGGTTCGATGCCGAATGAGGTTACGCTGTTATCAGTACTTTCAGGGTGCGCTTCCGTTGGAGCATTGCTTCAAGGT AAAGAGACTCATTGCTTCGCCATAAAACGCATCCTACGTGGCAGTATGAGCGATCCCGGTTTCGAAGTCTCCGTGATCAACTCTCTAGTGGACATGTACG CGAAATGCAAGAGTTTAGATTTGGCTCGTGCTTTGTTCCAGTTGCTTGCACCGCAAGAACGAGATGTCGTGACTTGGACCACGTTGATTGGTGGGTACTC ACAGCACGGAGATGCCAATGAAGCGTTGGAATTGTTCAAAAGGATGATCAGAGAGAATATCTTTATCAAGCCTAACGCATTCACAATCTCCTGTGCACTA ATGGCGTGCGCCCGTGCAAATTCCTTAAGCTTCGGTAAGCAGATTCACGGTTATATAATTCGTAACCGTTACGATGTTATTAACGTGTTGTATGTCCCCA ACTGCCTGATCGACATGTACTCGAAATCGGGGGATATCGAGGTTTCCAGGGTTGTGTTCGACAGCATGAAGCATAGAAATGCTGTTTCGTTCACAACACT TATAACTGGTTACGGTATGCATGGTCGAGGCGAGGAAGCTCTATCGGTTTTCGAAAAAATGAAGATATCCGGTTACGTTCCCGACAGCGTGACATTCCTT GTAGTCCTCTACGCTTGCAGCCATTCCGGAATGGTGGATAAAGGGATGGAATGTTTCAGTTCCATGACTGAAGAGTTCAAGATTCAACCGGGTGAAGAAC ACTACGCTTGTATGGTTGATTTATTAGGCCGAGCTGGCCGGTTCGATCGAGCTATGAAGCTAATCGAAACAATGCCTTTCCCACCAAGCTCGATAGTCTG GGTAGCTCTACTCAGCGGCTGCAGGAAACATGGTAACATCGAACTAGCAGAGTTGGCCACGAAAAAGCTGACCGAGTCGAAATCAGATAACGATGGGTCC TACACCCTTCTCTCGAACATCTACGCCGATGCTAGACGATGGAAAGACGTGGCGAGTGTTAGAACTCTGATGAAGCGTAGTGGGATAAGGAAGAGGCCAG GGTGTAGTTGGGTGCAAGTGAAGAACGGAAGCGTGACTTTTTTTGCAGGAGATAGAGCTCACCCAATGTGGAAGCAGGTTTACGAGGTTCTAGCTGGGTT GATCGAGCGGATTAAGGTGCTTGGATATGTTCCGGAAACGAGGTTCGCTCTTCATGATGTGGATGATGAAGAGAAAGGCGATCTTTTGTCTGAACATAGT GAGAAGCTTGCACTTGCGTTTGGAATCCTGACAGGGGTTCCTGGTGTGCCGATTCGGATAACGAAGAACCTGAGGGTGTGTGGTGATTGCCACAGTGCGT TTAGTTATGTGTCTATGGTGGTTGAGAATGAGATCGTTCTGAGAGATTCCAGCCGCTTCCATCATTTCAAGAATGGAGCTTGCTCCTGTAAAGGGTACTG GATATATGTGAACAAACTACGAAAGAAGTTGATTCGCCTCGTTAATAATAAGAACACAAACACCAGTTCGCTACCGCCACCACCATCACAGCAGCTCTCT CATTTCCTTCTCTGGTTAATCCGTCTCTGTTCCCCGGAGCTGCCGTGCAATCCATCGAATCCGCAATCCATGGAAGTTCATCAGGCAGTTTCCCCGTCGG CTGCTGCTGCTCCTCACGCTAACGGGATCAAGGAGGACGTATTCGATCCGGTTGCCATTCTCCGAGCAGACTCGCTACCTCCGGTGGCGTCGGAGAACGG ACAGAACGGATTCGGCGGCCAGAAGGAGATCGTGCTTGGGAGGAATGTGCACACGGTGTGCTTGGAGGTCACCGAGCCGGAAGCGAACGACGCATTCACT GGTGATAAGGACGCGCATATGGCCGGCGTGTTGGCTCGGTACAGGAACAACTTGCTCGAGCGGACTAAGCATCATCTAGGCTATCCCTACAACTTGGACT TTGATTACGGCGCTCTGTCCCAGTTGCAGCATTTCTCGATCAACAACCTCGGGGATCCGTTCATCGAGAGCAACTATGGTGTCCATTCGCGACAGTTTGA AGTTGGAGTGTTGGATTGGTTTGCTCGGTTATGGGAGATTGAGAGGGATGAATACTGGGGATACATAACCAACTGTGGCACTGAGGGTAACCTCCACGGG ATTCTAGTAGGGAGGGAAGTGTTTCCTGATGGCGTTCTGTACGCCTCCAGGGAATCGCATTATTCAGTCTTCAAGGCAGCTCGTATGTATAGAATGGACT GTGTCAAGGTCGACTGTTTGATGTCGGGTGAAATTGATTGTTCGGATTTGAAAACACCATCGCTTGCTAACAAAGACAAGCCAGCCATTCTCAACGTGAA CATAGGAACTACTGTCAAAGGAGCAGTTGACGACCTGGACCTTGTTATCAAGACCCTTGAAGAGAACGGATTTCCACAAGATCGATTCTACATTCACTGC GATGGAGCTTTATTCGGACTCATGATGCCTTTCGTCAAACGGGCACCAAAGGTCAGCTTCAAGAAACCAATAGGAAGCGTAAGCGTCTCAGGCCACAAAT TCGTCGGATGCCCAATGCCATGCGGCGTCCAGATCACACGCATGGACCACATCAAGGTCCTATCACGAAACGTCGAGTACCTAGCATCCAGAGACGCCAC GATCATGGGGAGCCGCAACGGCCACGCCCCAATCTTTCTCTGGTACACGCTCAACAAGAAGGGGTACAAAGGGTTCCAGAAGGAAGTCCAGAAGTGCCTC CGGAACGCACACTACCTCAAGGACAAGCTGCGCGAGGCCGGAATCGGAGCGATGCTGAACGAGCTTAGCAGCACCGTGGTGTTTGAGCGCCCTCACGACG AGGAGTTCGTGCGCAGGTGGCAGCTCGCCTGCCAGGGGAACATTGCACACGTCGTGGTCATGCCTAATGTGACCATCGACAAGCTGGACGATTTCTTGAA CGAGCTCGTCGAGAAGAGATCCACGTGGTATGAGGATGGGAAGGCTGAGCAGCCTTGTGTTGCTGAGGATATAGGGAAGGAGAACTGTGCTTGTGCTTTG CACAAGTGA
AA sequence Show only first row Show all	>Lus10018897 pacid=23144691 polypeptide=Lus10018897 locus=Lus10018897.g ID=Lus10018897.BGIv1.0 annot-version=v1.0 MLLRSPKLLTQIRRRRRSRIFLSTDFTIAAALPPPPPPLCPTLLKHCKSLHQANLIHQQSLIHSVNTHFSIHLISTYIALDGPSFALSLLQSLDPSPFLV FWWNALIRRALHLGQLEHSFSLFCRMIRLGWSPDHYTLPFVLKASGELPSFSRGSSVHCVVVKYGFESNVFVCNAAVSVYGRCGRMDCARQVFDEMCERE VVDLVSWNSIAAAYIQNSDMQGAVSLFRRMMRTNGADDSRIRADAVSIVNVLPACASLKLWLQGKEVHCFAIRSGLFHDVFVGNSLVDLYAKGGLMNEAS KVFDLMLEKDVVSWNAMVTGYAQSGQFESALALFEKMKEDEIDLDVVSWSAVIAGYAQRGLGIEALDTFRQMIVYGSMPNEVTLLSVLSGCASVGALLQG KETHCFAIKRILRGSMSDPGFEVSVINSLVDMYAKCKSLDLARALFQLLAPQERDVVTWTTLIGGYSQHGDANEALELFKRMIRENIFIKPNAFTISCAL MACARANSLSFGKQIHGYIIRNRYDVINVLYVPNCLIDMYSKSGDIEVSRVVFDSMKHRNAVSFTTLITGYGMHGRGEEALSVFEKMKISGYVPDSVTFL VVLYACSHSGMVDKGMECFSSMTEEFKIQPGEEHYACMVDLLGRAGRFDRAMKLIETMPFPPSSIVWVALLSGCRKHGNIELAELATKKLTESKSDNDGS YTLLSNIYADARRWKDVASVRTLMKRSGIRKRPGCSWVQVKNGSVTFFAGDRAHPMWKQVYEVLAGLIERIKVLGYVPETRFALHDVDDEEKGDLLSEHS EKLALAFGILTGVPGVPIRITKNLRVCGDCHSAFSYVSMVVENEIVLRDSSRFHHFKNGACSCKGYWIYVNKLRKKLIRLVNNKNTNTSSLPPPPSQQLS HFLLWLIRLCSPELPCNPSNPQSMEVHQAVSPSAAAAPHANGIKEDVFDPVAILRADSLPPVASENGQNGFGGQKEIVLGRNVHTVCLEVTEPEANDAFT GDKDAHMAGVLARYRNNLLERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIERDEYWGYITNCGTEGNLHG ILVGREVFPDGVLYASRESHYSVFKAARMYRMDCVKVDCLMSGEIDCSDLKTPSLANKDKPAILNVNIGTTVKGAVDDLDLVIKTLEENGFPQDRFYIHC DGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMDHIKVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNKKGYKGFQKEVQKCL RNAHYLKDKLREAGIGAMLNELSSTVVFERPHDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELVEKRSTWYEDGKAEQPCVAEDIGKENCACAL HK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018897 [exp]	0	1
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	2.2	0.9063
AT1G54920			unknown protein		Lus10004472 [exp]	2.8	0.8971
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	12.2	0.9053
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	13.3	0.9028
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	13.4	0.9020
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	13.7	0.8923
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	16.1	0.8908
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	17.3	0.9046
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	18.0	0.8915
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	18.3	0.9024

Compare expression of checked genes

Lus10018897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.