Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 285 / 3e-91 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G19630 284 / 2e-90 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT4G19230 277 / 4e-88 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G19270 258 / 1e-80 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 248 / 1e-76 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G36380 237 / 6e-72 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G05690 231 / 2e-70 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 226 / 6e-68 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT2G42850 223 / 8e-67 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT2G32440 214 / 8e-64 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028594 [exp] 909 / 0 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10024272 [exp] 300 / 1e-96 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10042652 [exp] 280 / 7e-89 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 273 / 2e-86 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 258 / 1e-80 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10033308 [exp] 255 / 2e-79 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 249 / 5e-77 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10041794 [exp] 237 / 3e-72 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 236 / 1e-71 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069600 [exp] 762 / 0 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.002G033000 [exp] 315 / 3e-102 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.004G235400 [exp] 278 / 4e-88 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.014G029100 [exp] 273 / 2e-86 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 262 / 4e-82 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 261 / 6e-82 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 258 / 3e-80 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.009G101700 [exp] 256 / 5e-80 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.001G242600 [exp] 254 / 8e-79 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.007G018400 [exp] 235 / 2e-71 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018898 pacid=23144739 polypeptide=Lus10018898 locus=Lus10018898.g ID=Lus10018898.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAACGAAGATGCTGATAGTTATGATAATCTCCTCTGTTATTGTCTCTGTTTTATTGGTTACAAAGCTGCTGCAGAGGTCTTCACCAAAGG AAATGGAGGTGATCCCGGGGAGCTTGGGATGGCCGGTTGTGGGTGAGAGCTTTTCGTTCATTTCGAATTTTGGTAGCCCTTCTGGGATCTTCAACTTCAT GAAGGAGAGACAAGAGAGGTATGGCAAGGTGTTCAAGAGCTTTGTGCTAGGAAGATTCACAGTGTTCATGACAGGCAGAGAAGCCAGCAAGATCCTACTC ACGGGCAAAGATGGTATGGTCAGCTTGAACCTATTCTACACCGGCCAGCAAGTTCTCGGTCCGACCAGCCTCCTCCAGACCACCGGCGACGCTCACAGGA GGCTGCGTCGCCTCATCGCAGAGCCCCTCTCAGTCGAGGGGCTGAAGAAGTACTTCCACTTCATCAACACTCTGGCTGCTCACACCATGGACCAGTGGAG TGGGAGGAGCAAAGTCTTTGTCCTTGAAGAAGCCTCCTTGTTTACACTCAAAGTGATTGGGAACATGGTAATGAGCTTGGAGCCAACTGGAGAAGAGCAA GAGAAGTTCAGATCAAACTTCAAGATCATATCTTCAAGCTTTGCTTCCTTGCCTTTCAAGCTTCCCGGCACAGCTTTCTACAATGGTATCAAGGCCAGGG ACAGAATGTACGACATGCTGGACGCGACAATCAGCAGGAGAAGGAGCGGAGAGAGCATTCATCAGGATTTTCTCGAGTCGCTGATAATGAAGCACAGTAA ATCCTCAGGAGACAGGAAATCAGAGGAAGAAAAAGACGATAAGCTGACAGATCAGCAGCTGAAAGATAACATCCTGACACTTCTAGTTGCAGGGCATGAC ACCACCACAGCTGCCCTGACGTGGACCATGAAGTTCCTGGCCGAAAATCCTGACGTCCTGGAAAAGCTCAGAGAGGAGCATAGGTTGATCATGGAGAAGA GAAGTGACGGGGCTGGTTTGACTTGGTCTGAAGTGAACAACATGCCTTACACAAACAAGGTGATTAGTGAAACGCTACGGAGAGCCACGATACTACCATG GTACTCAAGAAAGGCTGCTCAGGACTTCGAAATTGATGGGTATCAAATCAAGAAAGGTTGGTCGGTCAACTTGGACGTTGTATCGATTCATCATGATCCT GAAGTCTTTCCTGACCCAGAAAAGTTCGATCCGACTAGATTCGATGCACCTTTGAGGTCATACAACTACCTAGGGTTTGGGAATGGCCCTAGGATGTGCC CCGGGATCAACCTTGCAAAGCTTGAAATTTGTATCTTCATTCATCACTTGGTCACGCGATACAAGTGGACGGCTATGGAAAAGAACGACTCAGTTCAACC AACGTTAGTGAGGATGCCTAAGAACAAATATCCAGTTTTCGTTGAACCTCTTTGA
AA sequence Show only first row Show all	>Lus10018898 pacid=23144739 polypeptide=Lus10018898 locus=Lus10018898.g ID=Lus10018898.BGIv1.0 annot-version=v1.0 MEEATKMLIVMIISSVIVSVLLVTKLLQRSSPKEMEVIPGSLGWPVVGESFSFISNFGSPSGIFNFMKERQERYGKVFKSFVLGRFTVFMTGREASKILL TGKDGMVSLNLFYTGQQVLGPTSLLQTTGDAHRRLRRLIAEPLSVEGLKKYFHFINTLAAHTMDQWSGRSKVFVLEEASLFTLKVIGNMVMSLEPTGEEQ EKFRSNFKIISSSFASLPFKLPGTAFYNGIKARDRMYDMLDATISRRRSGESIHQDFLESLIMKHSKSSGDRKSEEEKDDKLTDQQLKDNILTLLVAGHD TTTAALTWTMKFLAENPDVLEKLREEHRLIMEKRSDGAGLTWSEVNNMPYTNKVISETLRRATILPWYSRKAAQDFEIDGYQIKKGWSVNLDVVSIHHDP EVFPDPEKFDPTRFDAPLRSYNYLGFGNGPRMCPGINLAKLEICIFIHHLVTRYKWTAMEKNDSVQPTLVRMPKNKYPVFVEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	3.5	0.9020
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	4.0	0.9167
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	5.0	0.8717
AT5G01700			Protein phosphatase 2C family ...		Lus10001268 [exp]	6.8	0.7705
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	9.3	0.8802
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	9.4	0.8756
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	14.5	0.8145
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	14.7	0.8544
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	20.3	0.8064
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	20.6	0.8316

Compare expression of checked genes

Lus10018898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.