Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43700 216 / 3e-68 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G31370 191 / 4e-58 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G40620 187 / 2e-56 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06070 181 / 1e-53 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 173 / 2e-52 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT4G38900 176 / 7e-51 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 162 / 1e-45 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G42380 92 / 6e-21 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT2G12900 88 / 6e-20 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G13150 87 / 8e-20 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028595 [exp] 469 / 9e-168 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 276 / 2e-91 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 273 / 3e-90 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10009907 [exp] 189 / 5e-58 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10024204 [exp] 187 / 4e-57 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10008605 [exp] 186 / 3e-56 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 186 / 3e-56 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012881 [exp] 177 / 1e-52 AT2G40620 290 / 7e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10030531 [exp] 177 / 1e-51 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069500 [exp] 288 / 3e-96 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 269 / 4e-89 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 193 / 1e-58 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 190 / 4e-58 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 185 / 2e-55 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 185 / 5e-55 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 182 / 2e-54 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G125400 [exp] 176 / 2e-50 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 169 / 6e-48 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G124400 [exp] 95 / 4e-22 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10018899 pacid=23144696 polypeptide=Lus10018899 locus=Lus10018899.g ID=Lus10018899.BGIv1.0 annot-version=v1.0 ATGAATTTCGGCGGGAAGCGCCCGATGACAGAGGACATAATAGACCGGATGCCGGAGACACCACACCGCGGATCTCACCACCGGAGAGCACACTCCGACA CCTCATTCCGCTTCGACGACTTGCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCGCTCGACCTCCTCACTCCTACTCCTCCGCTTCCTCAGAACTC AATGGCGCTAGATTCCCCGCCGATGTCCGAGGATTCGGCCTCCAATGGCGGCGCTGCAGCTCAGAGAGGGGCCAAGCCGATCAACCACGTTCGGAGCCTT TCCGTGGATTCGGATTTCTTCGAAGGGTTCGGGTTAGGGTTTGGCGACGAGAAGCCCGCCGGAGAGAGGAAGAGGTCGAACCACAGGCATAGCAATTCGA TGGACGGTTCTAGCTGCTCGGCTTCGTTCGAGGCTGATTTGTTGGCTGGGGATGTGAAGAAGTCTATGGCGCCTGATAGGCTGGCGGAGCTTGCTCGGAT TGATCCCAAGAGAGCTAAAAGAATTCTGGCTAATAGGCAATCGGCGGCGAGGTCAAAGGAGAGGAAGATTAGGTATACCGGTGAGCTGGAGAGGAAGGTG CAGACGCTTCAGGCGGAAGCAACTACGCTTTCTGCTCAGGTCACAGTGTTGCAGAGGGATACAAATGCATTAACAACTGAGAACAAAGAGCTGAAGCTCC GGTTGCAAGCTTTGGAGCAACAAGCACATCTCAGAGATGCTCTGAATGAAACACTGAGAGACGAAGTGCAGCGTCTGAGGATAGCAGCCGGCGAAATGCC ACCTTCAAACCGGAACCCTTTCCGACGAACTCTTGGAACCCAATTCTCCTCTCAGCAGCCGCCACATCATCAGGGTCTTCCGCCACAGTCACCTCCGAGC AACCAGGGTCTGAACGCTCCGCCCCACCCTAGCTACTCAAACTTCAGCCAGCTAGTTTAG
AA sequence Show only first row Show all	>Lus10018899 pacid=23144696 polypeptide=Lus10018899 locus=Lus10018899.g ID=Lus10018899.BGIv1.0 annot-version=v1.0 MNFGGKRPMTEDIIDRMPETPHRGSHHRRAHSDTSFRFDDLLLFDPSDLDLSSLDLLTPTPPLPQNSMALDSPPMSEDSASNGGAAAQRGAKPINHVRSL SVDSDFFEGFGLGFGDEKPAGERKRSNHRHSNSMDGSSCSASFEADLLAGDVKKSMAPDRLAELARIDPKRAKRILANRQSAARSKERKIRYTGELERKV QTLQAEATTLSAQVTVLQRDTNALTTENKELKLRLQALEQQAHLRDALNETLRDEVQRLRIAAGEMPPSNRNPFRRTLGTQFSSQQPPHHQGLPPQSPPS NQGLNAPPHPSYSNFSQLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10018899 [exp]	0	1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10028595 [exp]	1.0	0.9447
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	8.7	0.9326
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	10.0	0.9373
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	15.4	0.9262
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	15.5	0.9319
AT5G02090			unknown protein		Lus10010878 [exp]	16.7	0.9277
AT5G50090			unknown protein		Lus10034124 [exp]	16.9	0.8648
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	17.2	0.9235
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	17.3	0.8699
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	19.6	0.9240

Compare expression of checked genes

Lus10018899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.