Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52280 246 / 6e-80 GTE6 general transcription factor group E6 (.1.2) AT2G34900 241 / 6e-79 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT1G06230 117 / 3e-29 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 94 / 2e-21 GTE3 global transcription factor group E3 (.1) AT5G46550 91 / 3e-20 DNA-binding bromodomain-containing protein (.1) AT5G10550 89 / 1e-19 GTE2 global transcription factor group E2 (.1) AT3G27260 87 / 9e-19 GTE8 global transcription factor group E8 (.1.2) AT5G65630 87 / 9e-19 GTE7 global transcription factor group E7 (.1) AT5G63320 86 / 1e-18 NPX1 nuclear protein X1 (.1.2.3) AT1G17790 86 / 2e-18 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029774 [exp] 333 / 1e-113 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10042803 [exp] 330 / 8e-112 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10008393 [exp] 136 / 6e-39 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2) Lus10033624 [exp] 102 / 4e-24 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 102 / 4e-24 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 102 / 4e-24 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10014609 [exp] 91 / 3e-20 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 91 / 5e-20 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10034067 [exp] 84 / 8e-18 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043000 [exp] 319 / 4e-108 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 303 / 4e-102 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G073800 [exp] 280 / 1e-92 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G376400 [exp] 104 / 2e-25 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 105 / 3e-25 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 105 / 4e-25 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 101 / 1e-23 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 93 / 4e-21 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 88 / 2e-19 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.015G091800 [exp] 86 / 1e-18 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10018900 pacid=23144682 polypeptide=Lus10018900 locus=Lus10018900.g ID=Lus10018900.BGIv1.0 annot-version=v1.0 ATGCAGTCAATCTCCTCGCAAACCCCCAGTTCCGGAAACCCCCACCCCAACCCCAATCCCAATTTGAAGCTCCAGGTCGATAAGCTGGAGGAGAAAGTGA AGGAGCTGGAGCAACGTTACTCGAGCTTAAGCAAGAAGCCGAAACAAACGGTCTTGAAAGAGATGAGTGATTCGAGAATGCAGGAGCTTATTCGTCAATT CGGAACCCTTGTTCTTCGCCAGCTTACACAGCACAAATTGGCATTTCCCTTTATGGAACCAGTAGATGTGAAAGGTCTTGGCTTACATGACTACTATGAG GTTATTGAGAAGCCAATGGACTTCAGTACAATAAAAGCTCGGATGGAATCGCAGGACGGTAATGGTTACAGCAATGTGAGGGAGATATGCAGTGACGTGA GGTTAATATTCAACAATGCAATGAAGTATAACGAAGAATGGAGTGAAGTTCATGGCATGGCGAGAACTTTGCTGGAGAAGTTTGAACAGAAATGGTTGCA GTTTCTCCCGAAAGTAACCGAAGAGGAGCGGATAAGAGAAGAGGAGGAATCCGAGGAGTTTTCTAATGCAAAAATGGTTTTAAATTTGCGCGATGAGATT TGTGTACTCGATGCATGTCTCGACGATCTTAGAGAAATGGCTGTTGAGAACTCCAGGAAATGGTCGACTCAAGATAAAAGGAAGCTAGGCGCAGCCCTGA CGAGACTGTCCCCCGAAGATCTGACGAAAGCACTGGAGATCGTTGCACGATATAATCCAGGCTTCAAAGCTACGGCTGAGGAAGTGGACCTAGACATGGA TGCACTGAGCGAATCCATACTGTGGAGGCTGAAGATTTTCGCGAGGGACGCCCTAGAAGCACATGAAGGGACTAAGAACGACGTCAAGAAAATGAACTAG
AA sequence Show only first row Show all	>Lus10018900 pacid=23144682 polypeptide=Lus10018900 locus=Lus10018900.g ID=Lus10018900.BGIv1.0 annot-version=v1.0 MQSISSQTPSSGNPHPNPNPNLKLQVDKLEEKVKELEQRYSSLSKKPKQTVLKEMSDSRMQELIRQFGTLVLRQLTQHKLAFPFMEPVDVKGLGLHDYYE VIEKPMDFSTIKARMESQDGNGYSNVREICSDVRLIFNNAMKYNEEWSEVHGMARTLLEKFEQKWLQFLPKVTEEERIREEEESEEFSNAKMVLNLRDEI CVLDACLDDLREMAVENSRKWSTQDKRKLGAALTRLSPEDLTKALEIVARYNPGFKATAEEVDLDMDALSESILWRLKIFARDALEAHEGTKNDVKKMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10018900 [exp]	0	1
AT2G35470			unknown protein		Lus10035375 [exp]	15.8	0.6088
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10014845 [exp]	23.4	0.5970
AT5G14230			unknown protein		Lus10041588 [exp]	45.2	0.5796
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10029854 [exp]	46.3	0.5177
AT2G14045			unknown protein		Lus10042548 [exp]	47.5	0.5798
AT3G10330			Cyclin-like family protein (.1...		Lus10031056 [exp]	142.6	0.5226

Compare expression of checked genes

Lus10018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.