Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76940 175 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G21320 167 / 2e-48 nucleotide binding;nucleic acid binding (.1.2) AT3G13700 50 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G47580 49 / 3e-06 U1A spliceosomal protein U1A (.1) AT2G30260 48 / 5e-06 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT2G42240 43 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G55310 42 / 0.0004 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G13570 42 / 0.0004 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028599 [exp] 397 / 3e-137 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10028598 [exp] 304 / 2e-99 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042240 [exp] 50 / 1e-06 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 50 / 1e-06 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070200 [exp] 234 / 6e-74 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 198 / 2e-60 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 197 / 4e-60 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G224900 [exp] 124 / 3e-32 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.007G046600 [exp] 52 / 3e-07 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.003G035000 [exp] 49 / 4e-06 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018903 pacid=23144760 polypeptide=Lus10018903 locus=Lus10018903.g ID=Lus10018903.BGIv1.0 annot-version=v1.0 ATGCAGAACTCTGGACTACCCGCAGGCTATGAGATGAATAACTACTATGGAAATCCTAGAGATGATGGGGCAAGTAATCAGCATGTAAAAGACACCCAGA CAATTAATTCAGCTTATGACCGATACCTTCAAAATCAAGGTCTTTCTGTGGCTTCAAGAGAAGCCCCTCCGATGGGCGGAGATGGTTACCCAAGGAACAT GGGTGGTGGGGGAATGGGAGGTCTTCCAGGGGTAGATCCTGCAGTAATGGTACGCTCTCGAGCAACTGGTCCACCCAATATGGGGACCAATGGTTTTGGT GGTCACCCACCTGGACCAAATGCTATGCCTCGATCAAATCGTGATACAGTACCCCTTCCACCTGATGCTTCCAATACTCTATATGTCGAAGGGCTTCCTC ACGACTGTATAAGAAGGGAAGTGGCTCACATATTTCGACCCTTTGTCGGATATAAAGATTTGAGATTGGTTAGCAAGGAATCTAAGCATCGAGGTGAACC TATAATCCTTTGCTTTGTCGACTTTGTTGATCCACCATGTGCTGCAACCGCAATGAGTGCCTTGCAAGGATATAGGATGGACGAGCATGACCCTGAGTCT AACTACTTAAAGCTACAGTTCTCTCGCTACCCCGGTCCCAGATCCGGTATGGCAGGTCGTGGGAAGAGGCGAAGCTCCCCGCCAGTTTATTTCTTCCCGC GAGAGGGAAAAGAAGGGGTAATTTGTCTACTGTGCCAAAAACAATGGCCGATTACTGCCGCCGCAGCCTGGACCCGCCCCCAGAAGCCGCCGCTGCAGCA GCAACCTCCTCCTCTTCTCCCCGCCGGCGGTATGCTTAAACGGCCACGCAATGAATACGATCTGCAGAACTCTGGACCTCCTGCAGGCTATGATATGAAT AACTACTATGGAGCTGTGAGGGATGATGGCGCAAGTAATCAACATGTAAAGGATACAAAGACAATTGGTTCGGCATATGACCGCTATCTTCAAAATCAAG GTCTTCCTGCATTGGGTGGAGATGGTTTTCCAAGGAATATCGGCGGTGGAATGGGAGGTCTTCCTCCGGCAGATTCTGCTATAATGCGACATTCTCGAGC AACTGGTCCACCACCAAACATGGCACCCGGTGGTTTTGGCGGTGGTCACCGACCCCCACCAACAATGCCTCGATCAGGTCGTGATACTGTACCCCTCCCA CCTGATGCTTCCAACACTCTTTATGTCGAAGGGCTCCCTCACGACTGTATAAGAAGAGAAGTGGCTCACATCTTTCGTCCCTTTGTGGGGTATAAAGACT TGAGATTGGTTAGCAAGGAATCAAAGCATCGCGGTGAACCTATAATCCTTTGTTTCGTTGACTTTATGGATCCACCATGTGCTGCTACCGCGATGAGTGC TCTGCAAGGATATAGGATGGACGAGCATGACCCTGAATCTAGCTACTTGAAGCTACAGTTTTCTCGTTATCCCGGTCCCAGATCTGGTATGCCAGGTCGC GGAAAGAGGTGA
AA sequence Show only first row Show all	>Lus10018903 pacid=23144760 polypeptide=Lus10018903 locus=Lus10018903.g ID=Lus10018903.BGIv1.0 annot-version=v1.0 MQNSGLPAGYEMNNYYGNPRDDGASNQHVKDTQTINSAYDRYLQNQGLSVASREAPPMGGDGYPRNMGGGGMGGLPGVDPAVMVRSRATGPPNMGTNGFG GHPPGPNAMPRSNRDTVPLPPDASNTLYVEGLPHDCIRREVAHIFRPFVGYKDLRLVSKESKHRGEPIILCFVDFVDPPCAATAMSALQGYRMDEHDPES NYLKLQFSRYPGPRSGMAGRGKRRSSPPVYFFPREGKEGVICLLCQKQWPITAAAAWTRPQKPPLQQQPPPLLPAGGMLKRPRNEYDLQNSGPPAGYDMN NYYGAVRDDGASNQHVKDTKTIGSAYDRYLQNQGLPALGGDGFPRNIGGGMGGLPPADSAIMRHSRATGPPPNMAPGGFGGGHRPPPTMPRSGRDTVPLP PDASNTLYVEGLPHDCIRREVAHIFRPFVGYKDLRLVSKESKHRGEPIILCFVDFMDPPCAATAMSALQGYRMDEHDPESSYLKLQFSRYPGPRSGMPGR GKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	0	1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	4.0	0.8101
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	8.1	0.8082
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	8.1	0.7774
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	14.0	0.7618
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	15.3	0.7876
AT1G21320			nucleotide binding;nucleic aci...		Lus10028599 [exp]	18.7	0.7134
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	25.2	0.8048
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10036348 [exp]	25.6	0.7836
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	28.3	0.6834
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	30.1	0.7938

Compare expression of checked genes

Lus10018903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.