Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42140 1397 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 1396 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 955 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 948 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 928 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 791 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 610 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 527 / 4e-169 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 473 / 4e-148 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 173 / 3e-46 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028600 [exp] 2033 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 1710 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 1642 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10030999 [exp] 1016 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 990 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 959 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10027273 [exp] 957 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 843 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 804 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070300 [exp] 1719 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 1697 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 1062 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 970 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 931 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 906 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 906 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 894 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 601 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 526 / 2e-167 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10018904 pacid=23144639 polypeptide=Lus10018904 locus=Lus10018904.g ID=Lus10018904.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTCTCTTTCTCTCTTTTCCTTTTTGTTTTCTTCTTCTTTGACGCTGTCTCTCAGTTTTCTCCTCTTCCAATTCTCTTCTTACAACTCAGCT GCTTCCGCCACCTCCGTCCTCCGCCAGCCTCCCTCGCGGTGGCCGCCGGAATCTTCCTCTTCCTCGTCCTCCCCCAAAACCCATTTTATCACGCTCCGCC ACCACGGGAAAAAAAACAGTATTTACTCACGGCGACTAACTGCCCGCTGCACGAATTCCGAGGAATAAGCTTCTTTCTTATCCTTCAGTCATTCTCATTC TCCTTTCAGCTGGCTCTGCTGAAGCAGTCAACCGCGGCGATCACTTCTTCAGTGACATTTGACTTGGAATTCTGGCTCCGGCGAGCGATCGGAGTGGGAG GTGGAGTTCTGGTGAAAATATCTTCACATGGAATGGCAGATCTCGTTAGCTACGGTAATGCAGACCGTGACAGCGAGCAGGCATTAGTTGCTTTGAAGAA GGGTGCTCATCTTTTGAAATATGGTCGCAAGGGAAAACCTAAGCTTTATCCGTTCCGGCTTTCTTATGATACAACAACTTTGATCTGGATCTCAAGTAGC GGTGAAAGGAGTTTGAAGCTGTCTACTGTCTCTAAAATTATCCCTGGACAAAGAACTGCTGTCTTTCAACGATACCTGCGCCCAGAAAAGGACTATTTAT CATTTTCCCTTATATACAATAACGGAAAGAGGTCACTTGATCTGATTTGCAAGGACAAGGTCGAGGCAGAGGTGTGGATTGCGGGCTTGAAGGCATTAAT TGCTTCCCGTCAAAGTGGACGCTCGAAAATTGATGGATGGAATGATGGAGGGCTCTACATTGATGACAGCAAGGATTTGACATCAAATAGTGCTGCTGAT AGTTCACTTAGCATCACACGGGATATCACCTCTCCGGAGATTACTGTTAGCTATAATCCCACTATTTCTCCTAGGAGGTCTTGGCCCGAGAATTCTCCCC AGTCGGATAGATCACATGTAGGATTAGAAAACAGAAGCATGCAAGTTAAAGGATCCAGCTCAGATGCTTTCCGAGTCAGTGTTTCCAGTCAGCCTAGCAC TTCTAGCCATGGATCTGCACAAGATGACTGTGATGCTTTGGGTGATGTTTACTTGTGGGGTGAGATCATTAGCGATAGTGCTGTCAAGATTAGTGTCGAT AAAAATGCAACATACTTGAGTTCTAGAGCAGATATTCTTGTTCCGAAGCCACTAGAGTCTAATGTGGTTTTAGATGTACATCACATAGCCTGTGGTGTAA AGCATGCAGCCCTAGTCACAAGGCAAGGCGAAGTCTTTACATGGGGTGAAGAAGCTGGTGGCCGTCTTGGTCATGGTGTCGGAAAGGATTCTATTCAACC CCGTCTCGTTGAATCACTTGCAGTTACTAGCGTTGATTTTGTGGCATGTGGGGAGTTCCATTCTTGCGCAGTCACGATGGGTGGGGAACTCTATACATGG GGGGATGGCACACACAATGCTGGTATTCTTGGTCATGGTACTAATGTCAGTCACTGGATACCTAAGAGAATCTCAGGTCCTCTTGAGGGACTGCAAATTG CTTCAGTAACCTGTGGGCCATGGCATACGGCATTGATAACATCTACGGGGCAGCTTTTTACTTTTGGAGATGGGACTTTTGGTGTCCTGGGTCATGGTGA CAGACACAACGTTGCTTATCCCAGAGAAGTAGATTCGTTATCTGGCTTAAGAACCATTGCTGTTGCATGTGGAGTGTGGCATACTGCTGCTGTGGTGGAG GTAATTGTCACACAGTCTAGTTCGAGTATTTCCTCTGGAAAACTATTTACCTGGGGCGACGGAGATAAAAATCGTCTTGGACAAGGAGATAAGGAACCTC GGTTGAAACCCACATGCGTGCCGGCCTTGATCGACTACAATTTTCATAAAATTGCCTGCGGGCACAGTCTGACTGTTGGTTTGACAACGTCGGGACATGT ATTTACAATGGGAAGTACCGTTTACGGTCAGCTAGGCAGTCCTCAGGCTGATGGGAAGATGCCTTGTTTGGTTCAAGATAAACTTGCCGGTGAAAGTGTT GACGAAATCGCTTGTGGTTCATATCATGTTGCAGTTTTAACTTCCAGAAACGAAGTTTGTACTTGGGGAAAGGGTGCCAATGGGAGGTTGGGGCACGGGG ATATCGAAGACCGTAAAGCACCAACTCTAGTCGAAGCCTTGAAAGATAGACATGTAAAATACATTGCTTGTGGTGCAAACTACACTGCAGCTATATGTCT TCATAAATGGGTATCTGGTGCGGAGCAATCTCAATGTTCTGCTTGTAGACAGGCTTTCGGGTTTACTCGAAAGAGACACAACTGCTACAACTGTGGACTT GTGCATTGCCATTCTTGCAGTTCCCGGAAAGCGATAAGAGCTGCCCTGGCTCCCAATCCTGGAAAACCGTGTCGTGTATGTGATTCCTGCTATGCAAAGC TAAGCAAGGTTTCAGAATCTAATAACATCAGAAGAAACTCGGTACCTCGCCTTTCAGGTGAAAACAAGGACAGGTTGGACAAGTCTGAGATTAGGTCATC CAAGGCTAGTTTGCCTTCTAATGTAGATTTGATTAAGCAATTGGATAGTAAAGCTGCAAAACAAGGGAAGAAAGCTGAAACATTCTCCTTGGTTCGCTCC TCTCAAACACCATCGTTTTTGCAGCTTAGAGATGTTGTTTCGTCCACTAATTTTGAATTGCGGCCCAAGGTTCCCAGGCCGGTTCTTACACCGTCGGGTA TGAGTTCTAGGTCTGTATCGCCTTTCTCGAGGAGACCGAGTCCCCCTAGATCAGCAACACCTGTTCCGACAACATCTGGCCTCTCCTTCTCGAAAAGTAT CGCTGATAGTCTGAAGAAAACAAACGAGCTTCTGAATCATGAAGTGTTGAAGTTACGTTCGCAGGTTGACAGCCTGAAACAGAGATGCGAATTCCAAGAC TTGGAGCTTCAAAGATCGTCCAAGAAGATGCAGGAGGCAATGGCGATGGCTGCCGAAGAATCAGCTAAATCTAGAGCTGCGAAAGAGGTTATAAAATCAC TCACTGCACAGCTTAAGGATTTAGCTGAAAGGTTGCCACCGGGTGTCTACGACCCTGAGAGCGTGAAGCCAGCAGCGTATCTACTACCAAACGGTTTGGA GTCGAACGGTGTTCATCATCCTGAAACCAATGGACACCGCCATTCGAGGTCTGACTCAATCAGTGGGGTTTCGTTATCGTCTCCCACTAGAATTGATTTC AGTTCAGCAAATGGCAACCACCATGGTTCTTCTCTTCAATCATTTGGGGATCTGTCGGGACTCAACAGCAGAGATGATCATGCAGACGCCAGGCTGTCGA ATGGAACCAGGGCGCATTCAAATAGAATTGCATCAGAGTCCATTGACGGGAAGGAATCTAGGCAAGTCCAAGATGGAGAGAACGGGTCAAGACCTCGGGA TCAAGCACTCCCTGACAATGGTCATCAGGTTGAGGCGGAATGGATCGAACAGTACGAGCCCGGTGTGTACATAACTCTAGTGGCCCTGCGCGATGGAACC AGAGATCTCAAACGCGTACGCTTCAGCCGGAGAAGATTCGGGGAGCATCAAGCAGAGACATGGTGGTCAGAGAATCGCGAGAAAGTATACGAGAAATACA ACGTGCGTGGATCAGACAAGTCATCTGTTTCCGGTCAGACTGCTCGACGATCGGAAGGTTCCATGTCATCGGCTTCCTAG
AA sequence Show only first row Show all	>Lus10018904 pacid=23144639 polypeptide=Lus10018904 locus=Lus10018904.g ID=Lus10018904.BGIv1.0 annot-version=v1.0 MSSLSFSLFLFVFFFFDAVSQFSPLPILFLQLSCFRHLRPPPASLAVAAGIFLFLVLPQNPFYHAPPPREKKQYLLTATNCPLHEFRGISFFLILQSFSF SFQLALLKQSTAAITSSVTFDLEFWLRRAIGVGGGVLVKISSHGMADLVSYGNADRDSEQALVALKKGAHLLKYGRKGKPKLYPFRLSYDTTTLIWISSS GERSLKLSTVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIASRQSGRSKIDGWNDGGLYIDDSKDLTSNSAAD SSLSITRDITSPEITVSYNPTISPRRSWPENSPQSDRSHVGLENRSMQVKGSSSDAFRVSVSSQPSTSSHGSAQDDCDALGDVYLWGEIISDSAVKISVD KNATYLSSRADILVPKPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEEAGGRLGHGVGKDSIQPRLVESLAVTSVDFVACGEFHSCAVTMGGELYTW GDGTHNAGILGHGTNVSHWIPKRISGPLEGLQIASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRHNVAYPREVDSLSGLRTIAVACGVWHTAAVVE VIVTQSSSSISSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGHVFTMGSTVYGQLGSPQADGKMPCLVQDKLAGESV DEIACGSYHVAVLTSRNEVCTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYIACGANYTAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGL VHCHSCSSRKAIRAALAPNPGKPCRVCDSCYAKLSKVSESNNIRRNSVPRLSGENKDRLDKSEIRSSKASLPSNVDLIKQLDSKAAKQGKKAETFSLVRS SQTPSFLQLRDVVSSTNFELRPKVPRPVLTPSGMSSRSVSPFSRRPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNHEVLKLRSQVDSLKQRCEFQD LELQRSSKKMQEAMAMAAEESAKSRAAKEVIKSLTAQLKDLAERLPPGVYDPESVKPAAYLLPNGLESNGVHHPETNGHRHSRSDSISGVSLSSPTRIDF SSANGNHHGSSLQSFGDLSGLNSRDDHADARLSNGTRAHSNRIASESIDGKESRQVQDGENGSRPRDQALPDNGHQVEAEWIEQYEPGVYITLVALRDGT RDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGSDKSSVSGQTARRSEGSMSSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	0	1
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	1.4	0.8484
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	1.4	0.8413
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	4.6	0.8260
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	6.3	0.8245
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	7.7	0.7706
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	7.7	0.8149
AT2G02148			unknown protein		Lus10035090 [exp]	8.4	0.7781
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	12.5	0.7898
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	13.0	0.7641
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10014601 [exp]	13.9	0.7594

Compare expression of checked genes

Lus10018904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.