Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02290 208 / 1e-61 unknown protein AT3G45830 136 / 7e-34 unknown protein AT5G13950 69 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028606 [exp] 901 / 0 AT1G02290 206 / 7e-61 unknown protein Lus10018121 [exp] 142 / 8e-36 AT3G45830 803 / 0.0 unknown protein Lus10036145 [exp] 140 / 7e-35 AT3G45830 1034 / 0.0 unknown protein Lus10031980 [exp] 72 / 7e-13 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 54 / 3e-07 AT5G13950 292 / 1e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109600 [exp] 355 / 5e-116 AT1G02290 229 / 3e-68 unknown protein Potri.002G184000 [exp] 342 / 6e-111 AT1G02290 231 / 2e-69 unknown protein Potri.009G026100 [exp] 148 / 1e-37 AT3G45830 1059 / 0.0 unknown protein Potri.001G233800 [exp] 142 / 1e-35 AT3G45830 1075 / 0.0 unknown protein Potri.014G144100 [exp] 56 / 7e-08 AT5G13950 406 / 4e-127 unknown protein Potri.002G237800 [exp] 51 / 2e-06 AT5G13950 556 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018907 pacid=23144726 polypeptide=Lus10018907 locus=Lus10018907.g ID=Lus10018907.BGIv1.0 annot-version=v1.0 ATGGGGATTCAGAAGATTGGTAATTGGAAGTCACATTGCAGCACCACCTCGTATTTAGTCAATGGAAGTGGTGTGAAGGTCCTCAATAACATGGTTTCAG CACCGGACTTAGGGGGAGATGATTCTGATGATGAAGAAGAGCCAATAGAGTTGAATTGCGAGCTAGACACAGTAGAAGGTCATCTCTGCAGCGTGCCGTA TGATCTCTATGATCTACCTGACTTGAAGGAAATATTATGTCTCGACACTTGGAATTCATGTTTGACAGAGGACGAACGGTTTGACCTGTCAGCTTATCTC CCCGACATGGATGAACAAACGTTTGTGTTGACTATGAAGGATCTTTTCGATGGCAGTAACATATATTTCGGGAACCCGGTGGATATGCTCTTCAAAAGAT TAAAAGGTGGGCTCTATCCTCCAATGGTAGCTCATTACAGAGAAGGTATACAGTTTCTCCAGTGGAAAAAGCATTATAATCTATTGAGGTCTTACCATGA TAAGACGGTCCGAACTTTCGTGGAAATGAGAAGGTTGTGGGATCGGTGTGAGAAGAGTGTTGGTGTCGAGAATCGGGTGTTATTGTGGGCGGAAAGGAGT AAACAACACAGAGATGTCAATTTGCTTGATCTTAATAAACATCCTGGAGATGATAATAATCTAGCAAGTGAAGAAGTGCCCATGGACAGAAAGCCATTGG TGGAAGCTTTCAACATGGCCAAGTTTGTTTCTCCAAACTGCAGAGGAAAGGGTATTCTGAAGAAGAAGAAGGCATCTGGTACTGGTAATGACATCTCTAA ACCAGGTCGTTCTGTACCGAAAGGCGTTCTGAAAATAGTGCCGAAACAACCATCTGGTCAGTTGGATCAATCAAGTGGATTAAACCCACACATTATGATC AAGTCCCAAGGTTTACGAGATGTTAAGTTCTTAGAAGCAGGTGGCGTCTACAATTCAAACTATATGGGGCATGACATTCATAACAGGCTTTCCTCGCTTG TAAGCCAACCTCCATGTTTACTGAATCAGCAAGATGATATGAGAACCAGTGGCCAGTCTGGTACCTCTATTCAGAAAATAAGAAGGGGAACTGTGCCATC GTTGCATTACAATGAGCTTCACTTTCCAATGACGTCAGTGGGTGGAAGCAGATATACAGTCGATAATAGAAATCTATGGTCAGAGCTAGTCCCCGAAACC AGGGACTATTCGCTTGATTCTCTGAGATCGTTTCCCTTTGCAGTTCCATATCACAGAGAGGATCAGTACTTGATGGCCTTGAGAGATGAACACCGTCCTG TTTATTCAACGTTTCCAGCAAGAGTTCCTGATGTCGGAAAAAGGAAGCTAGAGACTGTAGCAGGACAGCTTTCCGAAAGAATACCGAAAGGAAAAAGTAA GGGCAGCTTGAAAATATCAGGCAATTCGATTGTTTCGGAGGGATTTACGAATGATCCTGCGCTTCCCTTGACGTACAAGCGTCGGAAGGGTCTAGCTAAA GTGAAGTCTTCGAACTTCGGCTAA
AA sequence Show only first row Show all	>Lus10018907 pacid=23144726 polypeptide=Lus10018907 locus=Lus10018907.g ID=Lus10018907.BGIv1.0 annot-version=v1.0 MGIQKIGNWKSHCSTTSYLVNGSGVKVLNNMVSAPDLGGDDSDDEEEPIELNCELDTVEGHLCSVPYDLYDLPDLKEILCLDTWNSCLTEDERFDLSAYL PDMDEQTFVLTMKDLFDGSNIYFGNPVDMLFKRLKGGLYPPMVAHYREGIQFLQWKKHYNLLRSYHDKTVRTFVEMRRLWDRCEKSVGVENRVLLWAERS KQHRDVNLLDLNKHPGDDNNLASEEVPMDRKPLVEAFNMAKFVSPNCRGKGILKKKKASGTGNDISKPGRSVPKGVLKIVPKQPSGQLDQSSGLNPHIMI KSQGLRDVKFLEAGGVYNSNYMGHDIHNRLSSLVSQPPCLLNQQDDMRTSGQSGTSIQKIRRGTVPSLHYNELHFPMTSVGGSRYTVDNRNLWSELVPET RDYSLDSLRSFPFAVPYHREDQYLMALRDEHRPVYSTFPARVPDVGKRKLETVAGQLSERIPKGKSKGSLKISGNSIVSEGFTNDPALPLTYKRRKGLAK VKSSNFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02290			unknown protein		Lus10018907 [exp]	0	1
AT1G02290			unknown protein		Lus10028606 [exp]	1.0	0.8812
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	2.4	0.8379
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	2.8	0.8481
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	3.9	0.8209
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	4.9	0.8207
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	6.0	0.8228
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	6.9	0.7944
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	7.6	0.7708
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	8.0	0.8132
AT4G04614			unknown protein		Lus10006902 [exp]	8.8	0.8057

Compare expression of checked genes

Lus10018907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.