Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60430 331 / 7e-118 ARPC3 actin-related protein C3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006335 [exp] 360 / 2e-129 AT1G60430 332 / 3e-118 actin-related protein C3 (.1.2) Lus10029603 [exp] 355 / 1e-125 AT1G60430 329 / 1e-115 actin-related protein C3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123100 [exp] 328 / 6e-117 AT1G60430 332 / 2e-118 actin-related protein C3 (.1.2) Potri.006G063400 [exp] 321 / 5e-114 AT1G60430 322 / 2e-114 actin-related protein C3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04062 [flax] [poplar] P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit
Representative CDS sequence Show only first row Show all	>Lus10018909 pacid=23144697 polypeptide=Lus10018909 locus=Lus10018909.g ID=Lus10018909.BGIv1.0 annot-version=v1.0 ATGGTTTATCACTCCAGTTTCGTGGATGATGATGGAGTTACAAAAGCTTGCGGCTGCCCGTTACTTCCTTTGAAATCCCATATTAAGGGTCCTGCTCCAA CTTCAAATCAAGATAAAACTGATATAGTCGACGAAGCAATAACCTTCTTTCGAGCAAACGTCTTCTTCAGAAACTTCGACATCAAGAGCCCTGCAGATAA GCTTCTCATCTACTTAACATTCTACATCAACGTTGCTTTGAAGAGGTTAGAAGGTTGCAGAACTTTGGCTGTAGGTACTAAAGCCATCATTAACTTGGGT TTGGAGAATGTTCCAGTCCCAGGAGAGTCTGGTTTCCCATTTCCTGGCCTATTCATCGAACCTCAATCTCACAATGAAGCAGAGCTGTTCAGGGAGTATC TGAAGCAGATAAGAGAAGAAACAAGTGGGAGGTTGTTGAGTGTTGCCTATAGACACAACGGCACTCCGAACAAATGGTGGTTCGCTTTTGCCAAGCGCAA GTTCATGAACGTCATTGCTCTTTGA
AA sequence Show only first row Show all	>Lus10018909 pacid=23144697 polypeptide=Lus10018909 locus=Lus10018909.g ID=Lus10018909.BGIv1.0 annot-version=v1.0 MVYHSSFVDDDGVTKACGCPLLPLKSHIKGPAPTSNQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLG LENVPVPGESGFPFPGLFIEPQSHNEAELFREYLKQIREETSGRLLSVAYRHNGTPNKWWFAFAKRKFMNVIAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	0	1
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	1.7	0.8867
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	2.8	0.8826
AT3G29130			unknown protein		Lus10023356 [exp]	4.0	0.8441
AT2G02410			unknown protein		Lus10026272 [exp]	4.5	0.8377
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	4.6	0.8456
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	4.9	0.8577
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	5.5	0.8486
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	6.9	0.8604
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	10.2	0.8304
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	11.0	0.8375

Compare expression of checked genes

Lus10018909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.