Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80380 469 / 6e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028609 [exp] 144 / 3e-41 AT1G80380 189 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058500 [exp] 515 / 0 AT1G80380 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.001G177300 [exp] 499 / 3e-179 AT1G80380 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10018910 pacid=23144757 polypeptide=Lus10018910 locus=Lus10018910.g ID=Lus10018910.BGIv1.0 annot-version=v1.0 ATGTACCTCAACGAACCTCAGAAGGCGAGGTTCTACCACTACTACATCCCGGTCTTCATCTGGTGCGAAAACCAGATTTCGAAGCACATTTCTCAGTTCA AAGATGGAGATGAAGTCACTCCTCTAGTGATTGGTTTCAGTGCACCTCAAGGCTGTGGAAAAACTACCCTTGTATCTGCTCTTGCTCATCTCTTTGATGT AACTGGAAGGAAGTCTGCAACAATATCAATAGATGACTTCTATTTGACTGCAGAGGATCAGGCGAAGCTGCGAGAAGCCAACCCGGGGAATGCACTTCTC GAGTTACGGGGAAATGCTGGGAGCCACGATCTTCCATTCTCGGTCAAAACGCTGACATCTCTGTGCAGAATGACTAAAGAAGGTATGAAGATGAAGCTAC CCCGCTATAACAAATCTGCATTCAATGGGAAAGGTGATCGAGGTGATCCTTCTGCCTGGCCAGAGGTTGAAGGGCCATTAACGGTGGTTCTGTTTGAAGG CTGGATGCTCGGGTTCAAACCTCAACCAGAAGAAGCTGTTCGAGCTGTCGATCCACAGTTGGAGATAGTGAACAAGAATCTCGAAGCATACTATGATGCA TGGGACAAGTTTGTGAACTGTTGGGCAGTCATTAAGATTCAGGACCCTAGTTGTGTCTACCAGTGGCGATTGCAGGCAGAAATTGCAATGAGGGAAGCAG GCAAACCTGGGATGACTGATGAGGAGGTGAAAGACTTTGTTTCAAGGTATCTGCCAGCATACAAAGCATATCTACCAACACTATATGCAGAAGGGCCAAA AGGGTCAATTCCTGAGAATCTACTAGTGATTGAAATTGATGAAGGAAGGAACCCTATTCTGGAGAACTAA
AA sequence Show only first row Show all	>Lus10018910 pacid=23144757 polypeptide=Lus10018910 locus=Lus10018910.g ID=Lus10018910.BGIv1.0 annot-version=v1.0 MYLNEPQKARFYHYYIPVFIWCENQISKHISQFKDGDEVTPLVIGFSAPQGCGKTTLVSALAHLFDVTGRKSATISIDDFYLTAEDQAKLREANPGNALL ELRGNAGSHDLPFSVKTLTSLCRMTKEGMKMKLPRYNKSAFNGKGDRGDPSAWPEVEGPLTVVLFEGWMLGFKPQPEEAVRAVDPQLEIVNKNLEAYYDA WDKFVNCWAVIKIQDPSCVYQWRLQAEIAMREAGKPGMTDEEVKDFVSRYLPAYKAYLPTLYAEGPKGSIPENLLVIEIDEGRNPILEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	0	1
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	4.9	0.8857
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	5.7	0.9247
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	9.6	0.9167
AT1G80380			P-loop containing nucleoside t...		Lus10028609 [exp]	9.9	0.9064
AT5G53920			ribosomal protein L11 methyltr...		Lus10022389 [exp]	11.2	0.8446
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	12.2	0.9086
AT3G17930			unknown protein		Lus10026379 [exp]	14.3	0.9115
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	15.7	0.9143
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	16.1	0.9136
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	18.0	0.8572

Compare expression of checked genes

Lus10018910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.