Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 882 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 864 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 778 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 748 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 677 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 558 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 522 / 3e-167 Leucine-rich repeat protein kinase family protein (.1) AT5G61480 513 / 2e-164 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT2G33170 510 / 3e-162 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 496 / 1e-155 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028612 [exp] 1798 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011756 [exp] 861 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 823 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 770 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 699 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 693 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 506 / 1e-161 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10006028 [exp] 483 / 5e-153 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 483 / 6e-153 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070900 [exp] 1190 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 1183 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G175700 [exp] 860 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 853 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 801 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 793 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 776 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 773 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 705 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 676 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10018911 pacid=23144665 polypeptide=Lus10018911 locus=Lus10018911.g ID=Lus10018911.BGIv1.0 annot-version=v1.0 ATGCCTAGAAGAAATGCAACGATCATAAAAACTCTGTTCATCTTCATCTTCTTCTTCTTCACAGCAAATTCCTTGAACCAAGAAGGCCTCTCACTACTCT CATGGCTATCAACATTCAACTCATCATCATCAACATCCTCCTCGTCGTCGTCGATTGCATTCTCTTCCTGGGATCAGACCCACCCGACGCCCTGCAAATG GGAGTTCATAACGTGCTCGAACGACGGGTTCGTAACCGAAATCATAATCTCTTCCATAAACCTCCCCACCACTTTCCCAACTCAGATCCTCTCCTTCAGT AGGCTCACGACTCTGGTCCTCTCGAGATCGAACCTGACCGGTTCGATCCCCGGTTCGATCTCGAACCTCTCGTCGACTCTGGTGGAGCTTGACCTCAGCT TCAACTCGTTGACGGGAGGAATGCCTGCTGAGATTGGGCTGATGGGTAATCTGCAGACTCTGTCGCTGAATTCGAATTTCTTGGAGGGAAAGATTCCTGG AGAGATTGGGAATCTTTCCAAGGTGAGGAAGCTTGAGCTTTACGACAACCGGATTAGCGGCGAGATTCCTTCTGAGATTGGGAAATTAGTGTTTCTGGAG AAGTTTCGAGCTGGCGGGAACTTGGGAATTTTGGGAGAGATTCCTTCTGAGATTTCAAACTGCAGGAGCTTGGTTTTCTTGGGTTTGGCGGATACGGGTG TTTCGGGGCGGATACCGGTCGGTTTCGGTCGGTTGAAGAATCTGAAGGTTCTTTCGGTTTATACTGCAAAACTGACCGGTGGGATTCCAGCCGAGTTGGG TAATTGCTCGGAATTGGAAAGTTTGTTCCTTTATCAGAACCAGCTCACGGGTGAGATCCCTCGCGAACTCGGTTGGCTGAGAAAGTTAAGACGGTTGCTC CTCTGGCAGAACAATCTGACCGGTCCGATCCCTGAAGTTCTCGGAAATGTGTCAGGTTTGGAAGTGATGGATCTTTCTATTAACTCTTTGTCAGGAATGA TTCCTTCTTCTTTTACCAATTTGGTTTCACTGTCGGAGTTTCTCCTGTCCGAGAATCTGTTTTCAGGAACGATTCCTGAGTTTATAGGAAACTTCTCGGG TCTGAAACAGCTCGAACTTGACAACAATAAGTTCACCGGCGAAGTTCCTGACAGTATAGGAAAGCTGACTGAGCTCTCATTGTTCTATGCATGGAACAAT CAGCTTTCAGGAAGGATTCCTGAAAATCTCGGGAAATGTTGGAACCTCGAAGCATTGGATCTTTCGCACAATTTCCTAACCGGTCCGGTTCCCAAATCGC TTTTCCGGCTCAATAACCTGACTCAGCTTCTCCTGATATCAAATAATCTGTCAGGTGAGATCCCACCGGATATTGGAAGCTGCCATGGCTTGATCCGATT GCGACTCGGTTCGAACAACTTCACGGGAAAAATCCCGCCCGAAATCGGAATCCTGAAGAACCTGAGCTTTCTCGAGCTTTCTCGTAACAACTTTGCGGGA CAGATCCCTCAGGAGATTGGCAACTGCACTCAGCTTGAGATGGTCGACTTGCATGAGAACACGATCCACGGCGTAATTCCTGAAACCGTCGAGTTTCTCT CGAAGCTGAAAGTCCTAGACCTGTCGTGGAACAGGATCTCGGGTCGGATCCCACAGAAAATTGGAAAGCTGACATCTTTGAACAAGCTGATGCTAGGTGG GAACTATATCTCTAGTGGGATTCCTTACTCGCTCGGTTTCTGTAAAGATTTACAGCTTTTGGACCTGAGCAGGAACAGGATTGAGGGCTCGATCCCATAC GAGATTGGACAACTGGAACAGCTTGACATCCTGCTGAACCTGAGCTGGAACCTGTTGACAGGTCCGGTTCCTGACAGCTTCTCAAACCTGTCAAAGCTCT CAACTTTGGACATCTCTCACAACATCCTGACCGGATCTTTGACTGTACTAGGTAGGCCTGAGAATCTTGTGTCCTTAAATGTATCTTTCAACAGATTCTC AGGATCTTTGCCGAACACCAAGTTCTTTCAGGATCTTCCTCCCTCGTGCTATTCAGGCAACACGGATCTCTGCGTTGGAGGATCCAACGACGATTGTTTA AACAATCAAAATCGGTCACACATATCGAAGAATTCGACCAGGAATCTCGTCATATGGGTTCTCCTAAGCCTATTCATCACATTCCTGATCCTAGTGTCAG GATTCATCCTGTTTGTCAGAATCCACGGCCCTAATTCGTGTAACCACAAAGATGTTGATCAGGAATCCTCGATCGAGAATTGGAACTTCACTACGTTCCA GAAGCTCAACTTCTCGCTCCACGACATAGTCACAAGCCTCTCGGATGCAAATGTGGTCGGAAAAGGCGGTTCAGGAATGGTGTACCGAGTTCAGACATCT ACAAATCAGGTCGTGGCTGTGAAAAAGCTGTGGCCTCAAACTGTCAGGAATTCTGACCCCACTCAGAGGGATTTCTTCTCGGCTGAGGTTCGAGCATTGG GGTCCATAAGGCACAAGAACATCGTTAGGCTTCTCGGGTGCTGCAAGAATGGGAAGACTAGGTTGCTTTTGTTTGATTACATCAGCCATGGAAGCTTGTC AGGATTGCTACACGAAAAAGACGAATTCGTCCTTGATTGGGAAGCAAGGTACAGGATTCTGTTGGGGGCAGCTCATGGCTTGGCTTATCTTCACCACGAT TGTACCCCTCCGATCGTTCATCGTGATGTCAAGGCCAACAATATACTCGTAGGGCAGCATTTCGAGGCCTTCCTCGCTGATTTCGGGATCGCGAAGCTCG TTGATTCTTCCGCGGAGGGTTCGTCTGGTGTTTCCAACTCGGTTGCTGGCTCTTATGGATACATTGCTCCTGAGTACGGATACAGTCTACGAATAACGGA GAAGAGCGACGTGTACAGCTACGGAGTGGTCCTGCTCGAGATCCTGACAGGAAAGCAACCGACCGACCCTCAGATTCCCGAAGGTGGGGGCCACATTGTG AACTGGGTCAACCGAGAACTGAGGGAGAAGAGAAGAGCGTTCACAACAGTACTAGACCAGCAATTAGTGACAAGGTCAGGGACCCAACTGCAAGAAATGG TCCAAGTTCTTGGAGTTGCTCTGCTCTGTGTCAACACTTCTCCTAATGAAAGACCCACCATGAAGGACGTTGTTGCAATGCTCAAAGAGATCAAGGACTC GAACAGCAATGATACAGATTCTGAGAAAAGTAGTACTACTGGGAAAAGATTGGTTAATCAGTGTTCTAGCTTTTCTAGATCTTCTGAGCCTTTGATAAGG TCACCTTGA
AA sequence Show only first row Show all	>Lus10018911 pacid=23144665 polypeptide=Lus10018911 locus=Lus10018911.g ID=Lus10018911.BGIv1.0 annot-version=v1.0 MPRRNATIIKTLFIFIFFFFTANSLNQEGLSLLSWLSTFNSSSSTSSSSSSIAFSSWDQTHPTPCKWEFITCSNDGFVTEIIISSINLPTTFPTQILSFS RLTTLVLSRSNLTGSIPGSISNLSSTLVELDLSFNSLTGGMPAEIGLMGNLQTLSLNSNFLEGKIPGEIGNLSKVRKLELYDNRISGEIPSEIGKLVFLE KFRAGGNLGILGEIPSEISNCRSLVFLGLADTGVSGRIPVGFGRLKNLKVLSVYTAKLTGGIPAELGNCSELESLFLYQNQLTGEIPRELGWLRKLRRLL LWQNNLTGPIPEVLGNVSGLEVMDLSINSLSGMIPSSFTNLVSLSEFLLSENLFSGTIPEFIGNFSGLKQLELDNNKFTGEVPDSIGKLTELSLFYAWNN QLSGRIPENLGKCWNLEALDLSHNFLTGPVPKSLFRLNNLTQLLLISNNLSGEIPPDIGSCHGLIRLRLGSNNFTGKIPPEIGILKNLSFLELSRNNFAG QIPQEIGNCTQLEMVDLHENTIHGVIPETVEFLSKLKVLDLSWNRISGRIPQKIGKLTSLNKLMLGGNYISSGIPYSLGFCKDLQLLDLSRNRIEGSIPY EIGQLEQLDILLNLSWNLLTGPVPDSFSNLSKLSTLDISHNILTGSLTVLGRPENLVSLNVSFNRFSGSLPNTKFFQDLPPSCYSGNTDLCVGGSNDDCL NNQNRSHISKNSTRNLVIWVLLSLFITFLILVSGFILFVRIHGPNSCNHKDVDQESSIENWNFTTFQKLNFSLHDIVTSLSDANVVGKGGSGMVYRVQTS TNQVVAVKKLWPQTVRNSDPTQRDFFSAEVRALGSIRHKNIVRLLGCCKNGKTRLLLFDYISHGSLSGLLHEKDEFVLDWEARYRILLGAAHGLAYLHHD CTPPIVHRDVKANNILVGQHFEAFLADFGIAKLVDSSAEGSSGVSNSVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEILTGKQPTDPQIPEGGGHIV NWVNRELREKRRAFTTVLDQQLVTRSGTQLQEMVQVLGVALLCVNTSPNERPTMKDVVAMLKEIKDSNSNDTDSEKSSTTGKRLVNQCSSFSRSSEPLIR SP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	0	1
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	1.0	0.9932
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	2.4	0.9224
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	2.8	0.9245
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	4.0	0.9149
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	5.2	0.8797
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	5.5	0.9145
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	5.5	0.9019
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	11.3	0.8591
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	12.0	0.8801
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	12.0	0.8789

Compare expression of checked genes

Lus10018911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.