Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 130 / 4e-34 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028649 [exp] 128 / 6e-33 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10021237 [exp] 117 / 4e-31 ND / Lus10028610 [exp] 97 / 1e-24 ND / Lus10011267 [exp] 100 / 2e-24 ND 39 / 0.002 Lus10028601 [exp] 88 / 2e-21 ND 38 / 0.001 Lus10028626 [exp] 74 / 2e-15 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1) Lus10025476 [exp] 48 / 2e-06 AT2G31620 44 / 3e-05 Receptor-like protein kinase-related family protein (.1) Lus10024691 [exp] 45 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018912 pacid=23144735 polypeptide=Lus10018912 locus=Lus10018912.g ID=Lus10018912.BGIv1.0 annot-version=v1.0 ATGGCGACGATCTACGACTTCCCGTCCTTAATAATGTTCATCATTATGTGTAGCCTAATTATAACCAGTTACGCAGATATCAATACGAATCATTGCGGCG CTCTAGGTGATAACTGGGCGTGCAATGTTGACTTGCTCCCGACCACAGATCCAGTCGAGTGGCAGGATGCGATACTCCAAACTTGCGGCAAGCACCCCGG CGCGTGCGACAATCGAACCGAGTTTGACTTCTCAACCGGTCGGACCAAAGTGTACTGCTACTTCTACTGCTACGACAGCGACCCGGAGGTGTGTCAGAGC TGTTACTCGTGCGTTATCAAACGGGCGAAAGAGACATGTCCCGGCGTTCGAGGAGCGGATGTTCATTATTCGGGTTACTGTACGTTGAGGTACGAGCTTT ACGACATATCTGAACACCGCTTCAGCAACCTAGAGCGGCTAACGGTCGAGGTTTTTACAAGCCATGGTAGTAGCATCCTTGGGTTGATTCCTTTGATAAA TGCGTGTCCCGGTTTGCAAACACTGCAATTTTCTTTTCATACGTTCAACTGTGGGACGGCTCTGCCGCCGTTGGATATGGCTAAAGTACGTCGGGATAGC ATCGAAGTGGTGGAGATGGTCGGGTTTCGTGATGCCAAGATTTTGCGCGAGTTTATGGAGTACGTGATGGAATATTTTGTGGGGTTAGAAAGAATAGTGA TTGATTTTTCCACTACATTCTTTTCCGACGATGCTTGTTTTGGTCGTTATATGTTACCGATGCTTGGTTGCTGCGATGATCAACGTTGTGAAGCCGAAGA GCTTATATTGGAGTTGAAATCACGAGCAGCACCAACAGTTGAATTCAAAATTATAAATCCTCACCCAAAAATAGAAGATTAG
AA sequence Show only first row Show all	>Lus10018912 pacid=23144735 polypeptide=Lus10018912 locus=Lus10018912.g ID=Lus10018912.BGIv1.0 annot-version=v1.0 MATIYDFPSLIMFIIMCSLIITSYADINTNHCGALGDNWACNVDLLPTTDPVEWQDAILQTCGKHPGACDNRTEFDFSTGRTKVYCYFYCYDSDPEVCQS CYSCVIKRAKETCPGVRGADVHYSGYCTLRYELYDISEHRFSNLERLTVEVFTSHGSSILGLIPLINACPGLQTLQFSFHTFNCGTALPPLDMAKVRRDS IEVVEMVGFRDAKILREFMEYVMEYFVGLERIVIDFSTTFFSDDACFGRYMLPMLGCCDDQRCEAEELILELKSRAAPTVEFKIINPHPKIED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018912 [exp]	0	1
					Lus10000984 [exp]	3.2	1.0000
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	3.9	1.0000
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	4.5	1.0000
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	6.3	1.0000
					Lus10017835 [exp]	7.1	1.0000
					Lus10040014 [exp]	7.7	1.0000
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	8.4	1.0000
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	8.9	1.0000
					Lus10032805 [exp]	9.5	1.0000
					Lus10001186 [exp]	9.9	0.9935

Compare expression of checked genes

Lus10018912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.