Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 472 / 4e-162 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT5G58940 335 / 3e-109 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT4G00330 328 / 3e-107 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT3G46290 226 / 1e-64 HERK1 hercules receptor kinase 1 (.1) AT5G59700 223 / 2e-63 Protein kinase superfamily protein (.1) AT4G39110 223 / 3e-63 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 223 / 3e-63 Malectin/receptor-like protein kinase family protein (.1) AT1G10620 219 / 1e-62 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G54380 219 / 4e-62 THE1 THESEUS1, protein kinase family protein (.1) AT1G70460 217 / 4e-62 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028613 [exp] 903 / 0 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10041796 [exp] 552 / 0 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 410 / 2e-138 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036376 [exp] 331 / 4e-108 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10018828 [exp] 328 / 5e-107 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 325 / 1e-104 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 309 / 3e-99 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10014760 [exp] 318 / 9e-97 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018203 [exp] 309 / 6e-94 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064200 [exp] 580 / 0 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 565 / 0 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 336 / 6e-110 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 332 / 2e-108 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 318 / 1e-102 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.017G096400 [exp] 232 / 3e-70 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G143700 [exp] 231 / 2e-66 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144100 [exp] 230 / 4e-66 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 229 / 2e-65 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.017G095900 [exp] 229 / 3e-65 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018913 pacid=23144683 polypeptide=Lus10018913 locus=Lus10018913.g ID=Lus10018913.BGIv1.0 annot-version=v1.0 ATGGATATAGAGCAAATCGCTTCATTAAGAACAGTGCCGTTCTTCTTCACAGTTGCCTTACTGTTAGCTTTACGGTTGCCTCGGAATCTCGCCTCCGGAT GTGAGAAACAGTGGAGGGTTTGCGGTACTGATCGAATTGAGTTTTTGGATGCTTTGGATGTTCAATTCATTCTCATCAATGGGAATGTTGTAGATGAAGA TTCGTTATGCGAGGCTCTCCAATTTCACGCTTCCACCGGCTGCATCTCTGCTCAAGAGTATGAAGGGATTCACTGCAGATTGGAATCTTTATCAGCTAAC TTACATCCTAAGAAATCAAGGAAACTTCTGCAGAAAGAGATTCAGGATGGTGAGGATAGTGCACCGGACCACCGAGCGAAAGATTCCGATTCTAGTTCCT CAAAGCACATAGGAGTAATAGCAGCCGGAATCGTTGCAATGTGTTGTGGTGTGCTATGCCCTTGTTTTTACAAGAGAAGAAGAGCAACTTCTCACACTGT TCTTTCCAAGGATTCGGTTTCAATGGACTCGGTTTCTTCAATGGGTTCTCCTTCGGCTTCTATGCACGGTAAAGTGCCTCCTAGTCCGCTTCGTGTGCCC CCTAGTCCTTCTCGGTTCGCAGCCTCCCCGAAACTTTCTAGACTCGGTTCTGTTCATGTCAACTTGGGTCAAGTTGCAAGAGCTACTCGTAATTTCTCTT CGTCTTTGAGACTCGGCGAAGGAGGGTTTGGAACCGTGTATAAAGCTTACTTGGATGACGGGCAGATTGTAGCCATAAAGCGAGCCAAAAAGGGAAACTT TGAGAACTTACGAACAGAATTCAGCAGTGAAGTCGAACTTCTAGCGAAGATCGATCACCGAAATTTGGTGAAGTTGCTTGGCTATGTCGACGCAGGAAAT GAACGCCTTCTCATAACCGAGTATGTAGCAAATGGTACTCTCAGAGAACACTTGGATGGTATGAAGCTTGAACAAGAAGTTTCCTTTGCTTCCCGAAAAT ATCCAATCCCTAGAAAAACTAATCATATATCTCTATTGCATCATCTGGCAGGTCAACGTGGGAAAATTCTCGACTTCAACCAACGACTCGAGATAGCCAT TGACGTTGCTCATGCCCTTACTTATCTCCATATATACGCAGAGAAACAAATCATTCACCGAGACGTGAAGTCATCGAACATTCTTCTGACTGAGAGCATG AGAGCTAAGGTTGCTGATTTCGGGTTCGCGAGGTTGGGTAATGTGGACTCTGAGCAAACTCACATCTCGACGAAAGTGAAGGGAACAGTTGGTTACCTTG ACCCGGAATACATGAAGACATATCAACTCACGCCAAAGAGCGACGTATACTCGTTTGGGATACTACTCTTAGAAATTCTGACTGGGCGTCGTCCTGTGGA GATAAAGAGACCTCCTGCTGAACGGGTTACCCTTAGATGGGCGTTCCAGAAGTACAACGAGTATGCGGTGGCAGAGATGGTGGATCCATTGATGGAAGAA GCAGTGGGTGGAGATATACTGAGAAAGATGACGAATTTGGCGATCAGATGCGCAGCACCGGTTAGAATCGATCGACCTGATATGAAAGCTGTAGGGGAAG AGCTGTGGGGGATAAGATCTGACTACCTCAAGAGCTCAAAGCTGAAGATGGCACAACAAGTACAATTACAACAACTTCATGTGGTACAACAAGACTCCAA AGATGCCTCTTCCGCCTTGTAA
AA sequence Show only first row Show all	>Lus10018913 pacid=23144683 polypeptide=Lus10018913 locus=Lus10018913.g ID=Lus10018913.BGIv1.0 annot-version=v1.0 MDIEQIASLRTVPFFFTVALLLALRLPRNLASGCEKQWRVCGTDRIEFLDALDVQFILINGNVVDEDSLCEALQFHASTGCISAQEYEGIHCRLESLSAN LHPKKSRKLLQKEIQDGEDSAPDHRAKDSDSSSSKHIGVIAAGIVAMCCGVLCPCFYKRRRATSHTVLSKDSVSMDSVSSMGSPSASMHGKVPPSPLRVP PSPSRFAASPKLSRLGSVHVNLGQVARATRNFSSSLRLGEGGFGTVYKAYLDDGQIVAIKRAKKGNFENLRTEFSSEVELLAKIDHRNLVKLLGYVDAGN ERLLITEYVANGTLREHLDGMKLEQEVSFASRKYPIPRKTNHISLLHHLAGQRGKILDFNQRLEIAIDVAHALTYLHIYAEKQIIHRDVKSSNILLTESM RAKVADFGFARLGNVDSEQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEILTGRRPVEIKRPPAERVTLRWAFQKYNEYAVAEMVDPLMEE AVGGDILRKMTNLAIRCAAPVRIDRPDMKAVGEELWGIRSDYLKSSKLKMAQQVQLQQLHVVQQDSKDASSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10018913 [exp]	0	1
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	1.0	0.9273
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	7.9	0.9124
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	17.5	0.9207
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	23.3	0.9202
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	31.3	0.9133
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014709 [exp]	33.0	0.9011
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10021064 [exp]	33.8	0.8790
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	33.9	0.9117
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	56.6	0.9087
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	60.3	0.9047

Compare expression of checked genes

Lus10018913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.