Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 557 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71890 551 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 546 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G71880 541 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G14670 537 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 535 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 532 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 430 / 2e-146 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 375 / 8e-124 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028614 [exp] 929 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 657 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028616 [exp] 591 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 584 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 555 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 490 / 3e-170 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 425 / 2e-144 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10014821 [exp] 417 / 1e-142 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 349 / 8e-117 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 557 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 543 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 419 / 6e-142 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 369 / 1e-121 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 365 / 4e-120 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018914 pacid=23144732 polypeptide=Lus10018914 locus=Lus10018914.g ID=Lus10018914.BGIv1.0 annot-version=v1.0 ATGAACGAACAGTCGCCGCCGGATGAGTCACAAAACAAGCCTTTCACGAAAAAATTGAAAGGATTGTATGCGTACCGCAAGTTAATCCTCGTGGCGGCGA TCGCGATCGGTCTCCAGTTCGGATGGGCCTTACAACTGTCGTTATTGACGCCTTACGTCCAGCTCTTGGGAATTCCCCACGCTTATGCCGGTTTCATCTG GCTGTGTGGGCCCATTTCGGGATTAATCGTACAGCCGTTAGTCGGCTACTACAGCGACAGGTGCACCTCCCGTTTTGGCCGCCGCCGCCCCTTTATCGGG ACCGGCGTCGGATTGGTGGCCATCTCCGTCTTACTCATCGGATACGCCGCTGACATCGGACATGCCGCCGGCGACGACCTCTCTAAAGAAATGAAGCCGC GTGCCATCACGATCTTTGTCCTCGGGTTCTGGATCCTCGACGTCTCCAACAATGTGCTGATGGGGCCATGCCGCGCCCTCCTCGCTGATCTTTCTGGGTC CGATCATAAGCAGACTCGTGTCGCCAACTCATTTTTCGCGTTCTTCGTTGCCATCGGCAACGTCCTCGGCTACGCTGCCGGCTCCTTCAACGACATCCAC AAGGTGTTACCCTTCACGGAGACAAAAGCGTGCGATGTATTTTGTGCGAATTTGAAAACTTGCTTCTTCATCTCCGCCACGCTGATTATTTTCTTCACCG TCATCGCTCTATACTTTGTCGAGGAGCAGCCGCTCACCGAGAAGCCGCCCCTTGACGAAGAGGATTCCGGTTTTGAAGTCTCGACATGCTCTGGGGTGCC GTTTTTTGGGGATTTGGCGAGTGCGGTGAAGAACATGAAGAGGCCCATGGCCATCCTTTTGGCGATGACATCTATCAACTGGATTGCCTGGTTCCCTTTC TTCCTCTACTCCACTGACTGGACTGGGAGGGAAGTTTACGACGGAGAATCCGCGAGTGGGAGTCCAGGGGAGCAGAAAGCATACGCCCATGGAGTCCATA TCGGATCGTTGGGGTTGATGATTAACGCCGCTGTGATGGGGTACATTTCGCTAGGAATCGACACGATGAGTCGGTGGTTCGGAGGCACTGGGAAGTTGTG GGGGGTAGTGAACATCATCCTCGCGATTGGTATGGGGTTGGCGTTGTTGATTAGTAAGTTAGCCGATTCCACTCGAAAATTCACCAGCAATGGGACCGCT CTACCGCCGCCTCTCGGTATTCAGGTCGGAACGTTGGCCGTCTTCGCGCTCTTAGGGATTCCTCTTGCGGTGGCTTATAGCGTTCCTTACGCTTTGGCAT CAATATTCTCCCATGAAGCTGGTGCAGGTCAAGGGCTTTCACTTGGACTACTGAATATCTCCATAGTCATCCCACAGATGATCGTATCGCTACTGAGTGG ACCATGGGACGCACTGTTCGGCGGCGGAAACATGCCGTCGTTCGTGGTCGGAGGAATTGCGGCGGCCTGCAGTGCGGTAGTAGCTCTATTGTTCCTACCA TCGGGCCCGCCGCCGAACACTGCGGCGCCGGAGGGCAAGACCGTCGACGACTACCAATCATAG
AA sequence Show only first row Show all	>Lus10018914 pacid=23144732 polypeptide=Lus10018914 locus=Lus10018914.g ID=Lus10018914.BGIv1.0 annot-version=v1.0 MNEQSPPDESQNKPFTKKLKGLYAYRKLILVAAIAIGLQFGWALQLSLLTPYVQLLGIPHAYAGFIWLCGPISGLIVQPLVGYYSDRCTSRFGRRRPFIG TGVGLVAISVLLIGYAADIGHAAGDDLSKEMKPRAITIFVLGFWILDVSNNVLMGPCRALLADLSGSDHKQTRVANSFFAFFVAIGNVLGYAAGSFNDIH KVLPFTETKACDVFCANLKTCFFISATLIIFFTVIALYFVEEQPLTEKPPLDEEDSGFEVSTCSGVPFFGDLASAVKNMKRPMAILLAMTSINWIAWFPF FLYSTDWTGREVYDGESASGSPGEQKAYAHGVHIGSLGLMINAAVMGYISLGIDTMSRWFGGTGKLWGVVNIILAIGMGLALLISKLADSTRKFTSNGTA LPPPLGIQVGTLAVFALLGIPLAVAYSVPYALASIFSHEAGAGQGLSLGLLNISIVIPQMIVSLLSGPWDALFGGGNMPSFVVGGIAAACSAVVALLFLP SGPPPNTAAPEGKTVDDYQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018914 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	1.0	0.8666
					Lus10004996 [exp]	7.7	0.8426
					Lus10003285 [exp]	9.5	0.8426
					Lus10000363 [exp]	11.0	0.8426
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	12.2	0.8426
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	13.4	0.8426
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	14.5	0.8426
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	15.5	0.8426
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	16.2	0.7610
					Lus10025781 [exp]	16.4	0.8426

Compare expression of checked genes

Lus10018914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.