Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21350 315 / 8e-109 Thioredoxin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028617 [exp] 360 / 7e-127 AT1G21350 275 / 1e-94 Thioredoxin superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071000 [exp] 335 / 2e-116 AT1G21350 350 / 8e-123 Thioredoxin superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10018916 pacid=23144675 polypeptide=Lus10018916 locus=Lus10018916.g ID=Lus10018916.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCAGCTGTTCCCGTTCTTCCCACTGCCGCGGCGCCGCCCAATTATGAAAGAAGAATCGCATGCACTGGTTCAATTCTTCCGCCGAAATGGA GACATTCGGGGACTGGGAGCTTCCGATCGCTGCGATTGAAGTCGACGAGGAACTTGGTGGTGCGAGCTGCAAGGACTGAGTCGAAGGGCGTTTCATTAGG ATTCAAAGCTCCTGACTTTCAACTGCAGGAGCCTCTCACTGGGAAGACATGGGAGCTTGATGATTTCGAGTCGCATCCTGGTTTGCTGGTTATGTTCATA TGTAACCACTGCCCATTTGTTAAGCATTTGAAGAAAGTTATAACAGACCTTTCAAATCTCTATATGAAGAAAGGGCTTGCTGTCGTTGCAATATCATCGA ACTCTGTAGTTACTCACCCACAGGATGGGCCAGAATTCATGGCTGAAGATGCAAAACTGTTTAACTATCCATTTCCTTATTTGTACGATGAGTCCCAAGA GGTTACACGAGCTTTCGGAGCTGTCTGTACACCAGAGTTTTTCTTGTTCAAAAAGGATGGGAGGAGACCATTTGAGCTGGTTTATCATGGCCAATTCGAC GACTCCAGACCCAACAATAATGTGCCTATAACTGGAAGGGACCTAAGCCGAGCAATAGACTGTGTTCTCAGTGGGCAGCCAGTTCCATCTGTTCAGACAC CAAGAGAGCCCCACAGCACTTGGATGGCTGAGAAGGCACTTTGTAGAAGATTGTGGACAGCGATGTCCACTCACTATTCTCAACCTTCAAAGTGCTGTTT GCTGCCTGCAATAACAGTGGAAGTTTGGCAGCAAAACAACCACTAA
AA sequence Show only first row Show all	>Lus10018916 pacid=23144675 polypeptide=Lus10018916 locus=Lus10018916.g ID=Lus10018916.BGIv1.0 annot-version=v1.0 MAAAAVPVLPTAAAPPNYERRIACTGSILPPKWRHSGTGSFRSLRLKSTRNLVVRAARTESKGVSLGFKAPDFQLQEPLTGKTWELDDFESHPGLLVMFI CNHCPFVKHLKKVITDLSNLYMKKGLAVVAISSNSVVTHPQDGPEFMAEDAKLFNYPFPYLYDESQEVTRAFGAVCTPEFFLFKKDGRRPFELVYHGQFD DSRPNNNVPITGRDLSRAIDCVLSGQPVPSVQTPREPHSTWMAEKALCRRLWTAMSTHYSQPSKCCLLPAITVEVWQQNNH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21350			Thioredoxin superfamily protei...		Lus10018916 [exp]	0	1
AT2G38570			unknown protein		Lus10022733 [exp]	5.5	0.8418
					Lus10008296 [exp]	8.0	0.7728
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	8.4	0.8392
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10009704 [exp]	8.5	0.7927
AT1G54680			unknown protein		Lus10033821 [exp]	9.5	0.8466
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	9.8	0.8503
					Lus10039070 [exp]	13.4	0.8066
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	15.7	0.8334
AT2G30695			unknown protein		Lus10008363 [exp]	26.9	0.8395
AT1G54680			unknown protein		Lus10018965 [exp]	30.6	0.8075

Compare expression of checked genes

Lus10018916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.