Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21260 230 / 3e-76 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT1G21360 228 / 8e-76 GLTP2 glycolipid transfer protein 2 (.1) AT2G33470 134 / 5e-39 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT2G34690 49 / 5e-07 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028618 [exp] 415 / 3e-149 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10042793 [exp] 315 / 3e-105 AT1G21370 486 / 2e-170 unknown protein Lus10029765 [exp] 278 / 6e-96 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10021169 [exp] 130 / 2e-37 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 124 / 7e-35 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 124 / 1e-34 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 94 / 2e-23 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188600 [exp] 295 / 4e-102 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 290 / 2e-100 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 140 / 2e-41 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 131 / 5e-38 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 119 / 2e-33 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.006G051800 [exp] 46 / 7e-06 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10018917 pacid=23144758 polypeptide=Lus10018917 locus=Lus10018917.g ID=Lus10018917.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTTTCAGAGATCAAATCAGCCATTGATGAGCTTACAGTAATGGCCATCACAATGAAACCTCATGATGATGGCTATGATCATGAAGTTGATG GCCATAACTGCAGTGACGGACATCCTGCAGCTGCAATCCCCACAATGCCCTTTCTCCATCTCTGCACCTTGGTCATTCAGGTTCTTGATAAGATTGGTCC AACAATGGCTGTTCTTAGACAAGACATAACTCAAAACATCCAGAGATTGGAAGGCCAATGTGAATCTGATCCTTCACTGTACTCGAACTTGGTCGAGATT CTGAAGAAAGAATCCAGCGAAGGCATCTCCAAGAAGAGGGACAGTTGCAGCAAGGCCTTTGTATGGCTTACAAGGTCACTGGATTTCACAGCTAGTTTGT TACAAAGGCTAGCCAAAGATCCTGAGCAGAACATGGAGCTAGCTGTGGGAGAATCATACAGCATCAGCTTGAAGCCATGGCATGGATGGATCTCTTCAGC TGCATTCAAAGTGGCTCTCAAGCTTGTACCAGACAACAGAACATTCATCACACTCTTGAAGCCAACAGAAGAAAACTATGAGTTCTTGAAAGAGGATATG CAGGCCATGGTCTCATTGCTTGTTCCTCTCTTACAAGACATCCATGCTACTCTGAGGCTGTATGGACTGGATAGGGTGAAGGCCACTTGA
AA sequence Show only first row Show all	>Lus10018917 pacid=23144758 polypeptide=Lus10018917 locus=Lus10018917.g ID=Lus10018917.BGIv1.0 annot-version=v1.0 MEKVSEIKSAIDELTVMAITMKPHDDGYDHEVDGHNCSDGHPAAAIPTMPFLHLCTLVIQVLDKIGPTMAVLRQDITQNIQRLEGQCESDPSLYSNLVEI LKKESSEGISKKRDSCSKAFVWLTRSLDFTASLLQRLAKDPEQNMELAVGESYSISLKPWHGWISSAAFKVALKLVPDNRTFITLLKPTEENYEFLKEDM QAMVSLLVPLLQDIHATLRLYGLDRVKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	0	1
					Lus10028652 [exp]	4.7	0.7664
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	9.6	0.7471
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	9.9	0.7280
AT3G59500			Integral membrane HRF1 family ...		Lus10008752 [exp]	10.0	0.7004
					Lus10037199 [exp]	10.0	0.7300
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10019435 [exp]	10.8	0.6974
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032257 [exp]	12.6	0.7320
AT2G03630			unknown protein		Lus10026665 [exp]	15.2	0.7106
					Lus10015249 [exp]	16.4	0.7148
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	20.2	0.7131

Compare expression of checked genes

Lus10018917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.