Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 420 / 2e-139 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT1G65610 404 / 2e-133 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT4G24260 404 / 2e-133 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT4G02290 280 / 7e-87 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 277 / 8e-86 ATCEL2 cellulase 2 (.1) AT1G19940 275 / 4e-85 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT4G09740 274 / 6e-85 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G11050 278 / 7e-85 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 277 / 1e-84 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G44540 273 / 2e-84 ATGH9B9 glycosyl hydrolase 9B9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028619 [exp] 1198 / 0 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 429 / 4e-143 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10012162 [exp] 405 / 1e-133 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 404 / 3e-133 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 340 / 4e-110 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 332 / 2e-105 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10034515 [exp] 301 / 9e-95 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10033156 [exp] 299 / 4e-94 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10007584 [exp] 288 / 2e-91 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188500 [exp] 801 / 0 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.010G177300 [exp] 439 / 5e-147 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.008G079500 [exp] 437 / 3e-146 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.003G151700 [exp] 412 / 2e-136 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 408 / 7e-135 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.002G202400 [exp] 288 / 6e-90 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 281 / 3e-87 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G157600 [exp] 280 / 7e-87 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 282 / 1e-86 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G083200 [exp] 277 / 4e-86 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10018918 pacid=23144642 polypeptide=Lus10018918 locus=Lus10018918.g ID=Lus10018918.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCATCGTCAGCTCCGATGGGTTCCAACTCTTCCGACATAGACAGGACCAGGATATCGTTCGTCCACACTGTCCCAGCAGCGAGCAGGATCC TGCCATCGGCGAGCCAGTGGAACTCCATTGAGCTGGACTTCAACCTCGTCCCACGTTCCGAAAACGCGTACCACTCGATTCCTTCGAAATTTTCAAAGTC ATACACCTACGAGCTGGCCATCTCGGATAAGAAGTACTTCCAAAGGTTCCTCTGTGTGTTGAGCCTTGTAATCCTTGTTGCAATAGGACTCCCTTTGCTC ATCCGGTTCTTGCCTCGAACACGTGGCCATGGTGATGTTCCGATGAACCTCACTCTGGCGGTCAATCAGGCTCTCAACTTCTTCGACGCCCAAAAATCGG GACGATATCCTAGCACGAGTCCGGTGAAGTTCCGGGGGATTTCGGGGATGGAAGACGGGAATTCGAGGACTCCGCCCGTGGATTTGAAAGGAGGGTTCTA TGACTCAGGAAGCAATGTGAAGTTCAGCTTCCCAACTGCATACACAGTCACACTGCTGAGCTGGAGTGTGATTGAGTACCATAGCAAGTATGAAGATGTT GGTGAGCTTCAACATGTTAAGAACATCATCAAGTGGGGTAGTGATTACTTGCTCAAGGCCTTTGTTAGGTCTAACTCTACCAATGATCCCATCACATTGT ACTCACAGGTTGGCAGCACTGGAAATGGAACCAACCCATACACTGATCTAAGCTGCTGGCAAAGGCCAGAGGACATGAGCTATCCAAGGCCGGTTTTCGC CTGCGACAGCTCGGCCGCTGACCTGGCAGGTGAAGTCGTGGCAGCACTGTCAGCAGCATCAATGGTTTTCCAAGAAGAGAAGGACTACTCCCATGAACTA GTTACAGCAGCAGTGAGCTTGTATGGTTCTGCAACTAAGAACAATGGTGGAAAGAACACTTACACTAACATCAAGGCATGTGGTGGTGAGACAACCAATT TTTACAACTCATCAGGGTTCCAAGATGAGCTTGTTTGGGGTGGAACTTGGCTCTTCTTTGCCACTGGTAACACTTCTTACCTTGAGTATGCTGCTCTCAA CTTCACTGCAGCTGTGAAGCAGCAGGTTCCTCAAGAGCAAGGTGTCTTCTATTGGAACAATAAGGTCACTGCTACTGGTGTTTTACTGACGAGGCTTAGG TTCTTCCGAGATCTTGGATACCCTTTCGAGATAGGATTCAAAGCAGCATCAGACATGACAGAAGCCATGATATGTTCTTATCTTTCTGATAAGAACTTCC ACAAGTCACCTGGGGGTTTGCTTATCTTGATGCCTGATGGAGGTCCACCACTTCAGTATGCTGCAACAGCATCGTTCCTCACTAAACTGTTCAGCGACTA CCTTGAACTCGGTCTTCGGTCCAGTGTCACTTGTGGTACCAATGGCTTCTCTCTTGAAACCATGAGGACATTCTCCACTTCACAAGTAAGGTACATTCTT GGAGACAATCCAATGAAGACGAGCTACATGGTAGGGTTCGGGAAGAAGTATCCGACACACGTTCATCACAGGGCAGCATCGATCCCGTCAGACGGTAAGC AGTACAGTTGCAGCGAAGGCGATCAATGGAAGCAGAAGAAAGAACCAAATCCCAACACTGTTTATGGAGCAATGGTTGCAGGACCGGATAAGTCCGACAA GTTTTCCGACGACAGGACCAAGCCGTGGTTCACTGAGCCAACCATAGCTAGCAATGCCGGTCTGGTTGCTGCCCTCATAGCGATCCACGATCCGCCCTCC GGATCTTTGGTGGGTATGGATAAAGATGGAATCTTTTCAAGTGTTCATCTAACCCCACCAGCTAGCTAG
AA sequence Show only first row Show all	>Lus10018918 pacid=23144642 polypeptide=Lus10018918 locus=Lus10018918.g ID=Lus10018918.BGIv1.0 annot-version=v1.0 MVGSSSAPMGSNSSDIDRTRISFVHTVPAASRILPSASQWNSIELDFNLVPRSENAYHSIPSKFSKSYTYELAISDKKYFQRFLCVLSLVILVAIGLPLL IRFLPRTRGHGDVPMNLTLAVNQALNFFDAQKSGRYPSTSPVKFRGISGMEDGNSRTPPVDLKGGFYDSGSNVKFSFPTAYTVTLLSWSVIEYHSKYEDV GELQHVKNIIKWGSDYLLKAFVRSNSTNDPITLYSQVGSTGNGTNPYTDLSCWQRPEDMSYPRPVFACDSSAADLAGEVVAALSAASMVFQEEKDYSHEL VTAAVSLYGSATKNNGGKNTYTNIKACGGETTNFYNSSGFQDELVWGGTWLFFATGNTSYLEYAALNFTAAVKQQVPQEQGVFYWNNKVTATGVLLTRLR FFRDLGYPFEIGFKAASDMTEAMICSYLSDKNFHKSPGGLLILMPDGGPPLQYAATASFLTKLFSDYLELGLRSSVTCGTNGFSLETMRTFSTSQVRYIL GDNPMKTSYMVGFGKKYPTHVHHRAASIPSDGKQYSCSEGDQWKQKKEPNPNTVYGAMVAGPDKSDKFSDDRTKPWFTEPTIASNAGLVAALIAIHDPPS GSLVGMDKDGIFSSVHLTPPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10018918 [exp]	0	1
					Lus10011723 [exp]	4.1	0.9722
					Lus10005396 [exp]	6.3	0.9648
					Lus10003840 [exp]	7.7	0.9648
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	8.9	0.9648
					Lus10022573 [exp]	10.0	0.9648
					Lus10012429 [exp]	11.0	0.9648
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	11.8	0.9648
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	12.6	0.9648
					Lus10006661 [exp]	13.4	0.9648
					Lus10007179 [exp]	14.1	0.9648

Compare expression of checked genes

Lus10018918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.