Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77220 296 / 2e-96 Protein of unknown function (DUF300) (.1) AT4G38360 201 / 1e-61 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G23070 145 / 3e-39 Protein of unknown function (DUF300) (.1) AT5G26740 81 / 2e-16 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 78 / 2e-15 Protein of unknown function (DUF300) (.1) AT1G11200 57 / 5e-09 Protein of unknown function (DUF300) (.1) AT4G21570 53 / 1e-07 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028621 [exp] 773 / 0 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 257 / 2e-82 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10022625 [exp] 194 / 3e-60 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10036614 [exp] 149 / 1e-41 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1) Lus10022626 [exp] 115 / 4e-30 AT4G38360 319 / 2e-108 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10035832 [exp] 117 / 1e-29 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 80 / 5e-16 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 80 / 5e-16 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10011236 [exp] 52 / 7e-08 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188200 [exp] 333 / 2e-110 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 329 / 6e-109 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.004G204600 [exp] 207 / 1e-61 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 206 / 4e-61 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.018G062600 [exp] 164 / 3e-46 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 75 / 2e-14 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 58 / 3e-09 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 49 / 2e-06 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 49 / 4e-06 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10018920 pacid=23144751 polypeptide=Lus10018920 locus=Lus10018920.g ID=Lus10018920.BGIv1.0 annot-version=v1.0 ATGGGATGGATTGGAGTTACTTGCTCCTTGTTTTGGCTGTTCACTCTAGCTGAATCGACAAGTCGGTCAGGGAAGGTTTGGACGGTGAACCTGGTTTCGG AGAATGTTGCGCATTTGAGCTGGCCGATCTTCAGTGCAAGCGTGTTTGTGCTTGTGGCTCTTGTCCTCTCAATGTACCTCATATTTGAGCATTTAGCCTC GTACAATAAGCCGGAGGAGCAGAAGTTTTTGGTTGGACTCATTCTGATGGTTCCCATTTACTCTCTTGAATCGTTTCTGTCTCTGTATGATTCAAGTGCT GCATTCAACTGGGAAGCTATTCGAGACTGCTACGAAGCTGTGGCAATGTATTGCTTTGAGAGATATCTGATTGCATGCTTAGGTGGGGAAGACAGCACCA TTCGGTTCATGGAGACTCAGACGGATGGCATTTCCAGCACACCTCTTTTGGACGAAGCATATGCTTATGGAGTCGTAGAACACCCTTTTCCACTGAATTG CTGTCTACGGCCTTGGAACCTTGGCCGTGACTTTTATCAAGCAGTGAAAGTTGGAATTGTTCAATATATGATTCTGAAAATGATATGTGCACTGCTAGCA ATAATCCTTGAAGCTTTTGGAGTTTACGGAGAGGGAAAATTTGACTGGAGCCACGGTCTGTATGATTTTGATCACCGATGTTCTAAGATGGGTGTTGCAG CTGTTGTACATCTCTATGTCTTCCCTGCGGTGCCTTACAAGCGCGGGGAGAGGTGTGTCCCTAACGTTGCTGTCATGGCCGACTATGCTGCTCTAGGAAC CCCAGCTGATCCGGAAGAGGTTGAGGATTCCGAAAGATACACTAAGGTACGCTTAGCTCGCCACGACGAGAAGCAAAAGCCTATGAACATCCCTCAGAGT GTTCGGGACGTGGTCTTCGGCAGCAGCGAAATTATCGTGGACGACATGAAGTACACAGTCTCACACGTTGTGGAGCCGGCGCAGAGAGGGATAGCCAAAA TCAACAAAACCATCCATAAAATATCCGAGAACGTCAAGCGCCAGGGTGAGGAGCGGAAGAGGAGCTCAAAGGACGACAACTTCCTCGTGCCTTTGAACCC ATGGACGAGGGAATTCTCCGACGCTCACGAGAACCTCGGGGAAGGCAGCGTCAGTGACAGCGGGTTGCTCGATGTGAAGAAGCAGCAGTCGTCCCCATTG AGAGCCATGCCAGGATCCAGGCTGAAACGAGGTAGATGA
AA sequence Show only first row Show all	>Lus10018920 pacid=23144751 polypeptide=Lus10018920 locus=Lus10018920.g ID=Lus10018920.BGIv1.0 annot-version=v1.0 MGWIGVTCSLFWLFTLAESTSRSGKVWTVNLVSENVAHLSWPIFSASVFVLVALVLSMYLIFEHLASYNKPEEQKFLVGLILMVPIYSLESFLSLYDSSA AFNWEAIRDCYEAVAMYCFERYLIACLGGEDSTIRFMETQTDGISSTPLLDEAYAYGVVEHPFPLNCCLRPWNLGRDFYQAVKVGIVQYMILKMICALLA IILEAFGVYGEGKFDWSHGLYDFDHRCSKMGVAAVVHLYVFPAVPYKRGERCVPNVAVMADYAALGTPADPEEVEDSERYTKVRLARHDEKQKPMNIPQS VRDVVFGSSEIIVDDMKYTVSHVVEPAQRGIAKINKTIHKISENVKRQGEERKRSSKDDNFLVPLNPWTREFSDAHENLGEGSVSDSGLLDVKKQQSSPL RAMPGSRLKRGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	0	1
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	1.7	0.8901
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	8.8	0.9075
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	10.2	0.8798
AT1G31130			unknown protein		Lus10018940 [exp]	10.2	0.8456
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	12.2	0.8458
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	13.6	0.8999
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	15.9	0.8083
AT5G35690			unknown protein		Lus10000922 [exp]	16.5	0.8618
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	16.8	0.8837
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	17.7	0.8705

Compare expression of checked genes

Lus10018920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.