Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77130 791 / 0 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 709 / 0 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT4G33330 465 / 8e-157 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G54940 382 / 3e-125 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 381 / 1e-124 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT5G18480 128 / 4e-31 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 94 / 9e-21 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 89 / 8e-19 ATGOLS6 galactinol synthase 6 (.1) AT1G56600 88 / 1e-18 ATGOLS2 galactinol synthase 2 (.1) AT1G60450 86 / 6e-18 ATGOLS7 galactinol synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028623 [exp] 1211 / 0 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 723 / 0 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10033485 [exp] 513 / 1e-175 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10021731 [exp] 491 / 1e-166 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 485 / 3e-164 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10029932 [exp] 374 / 3e-121 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10031507 [exp] 368 / 2e-119 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10027949 [exp] 122 / 3e-29 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 113 / 3e-28 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187900 [exp] 942 / 0 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.007G107200 [exp] 793 / 0 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 792 / 0 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G029900 [exp] 493 / 7e-168 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 407 / 9e-135 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 394 / 2e-129 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 124 / 7e-30 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 91 / 9e-20 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 87 / 3e-18 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.014G116800 [exp] 86 / 5e-18 AT2G47180 568 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10018922 pacid=23144700 polypeptide=Lus10018922 locus=Lus10018922.g ID=Lus10018922.BGIv1.0 annot-version=v1.0 ATGCCCGCCGGAGTAGTCGGAACATCCGGCGGTAGCGGAGGAAGCAGCGGCGCCACCTCTCCTAACTCCTTCGAGCACAGACACCGTCTGTCTTCTTCAC TGTCCATGGGAGAGGATAGTCCCAGAAGGAGGTTCTTGAGAGGGAGGAATTTCAGAGATGTGGAGAAGGCATTCCATGTTCCTGCTCAGTGCAGGAGCCT TAATTGCAAGACTTCTACGCTCAGATTCGTGCTGCTGATCATTGCTTTGGGCACATTGGTTACTCTCTACCGTTCTCCAGCTGTTCATGTTACTGATTAT CCTCACCATTTGGAAACGCATTCTCCTTTGGTCGAGCGTTGGATCAGAGAGGATGTTGCTGAAGATCCTCGTTACATCTCAACAGCAGAAGTCGACTGGG ACACAGTTTCAAACATATTCGAGAAGCTGAACGATACAGATCAGTACCAAGGAATTGGATTGTTGAACTTCAACAGTAGCGAGGTCAAAACTTGGAAGCA TTTCTTACCTGACGTTGACCATGTAGTTCTTCAGCTAGACCATGTTCAGAAGAACGTAACTTGGGAGTCACTGTACCCGGAATGGATAGATGAAGAAGAG GACTTCAAAGTTCCGACTTGCCCTCCGGTACCCAAAATAAAGTTCGGTGGGAAGCCACGGATCGATGTCCTTGCGGTCAAACTTCCTTGCAACAAGTCCG GAGGGTGGTCAAGAGATGTTGCTAGCTTACATCTGCAGCTTGCTGCGGCAAGTCTTGCCTCTTCTGGGAAAAGTTACCATCCAGTACGCGTGATCTTGAT CACTGACTGCTTACCGGTTCCGAATTTGTTCACTTGCAAGGAGCTTAACTTTCGCGAGGGTAACATGTGGCTCTATGAACCCAACCCCCATAGGTTGAGA CAGAAGTCACAGCTTCCGGCTGGTTCATGTGAACTTTCCGTCCCTCTCAATGCCAACGAATATTTCCACTCCGAAAGGCCACATCGTGAAGCGTACGCAA CGATTCTGCACTCGGCACAGATGTACGTCTGCGGAGCCATCGTAGCAGCTCAAAGCATTCGCAGGGCGGGTTCAACTCGAGATCTAGTGATCCTCGTCGA CGAAACAATCAGCGAATACCACAGGGGAGGACTCGAAGCGGCCGGGTGGAAAGTCTACACAATCCAAAGAATCCGGAACCCGAAGGCTGAACGAGACGCC TACAACGAATTTAACTACAGCAAATTCCGTCTCTGGCAGCTCACCGATTACGACAAGATCATCTTCATCGACGCAGACATGCTCATCCTCCGAAACATCG ACTTCCTCTTCGAAATGCCCGAAATCACCGCCACCGGAAACGACGGCACCCTATTCAACTCCGGTGTGATGGTCATCGAGCCGTCAAACTGCACTTTCGA GCTCCTCATGGATCACATCAACGACATCGTATCCTACAACGGGGGAGACCAAGGCTACCTCAACGAGATCTTCACGTGGTGGCACCGGATCCCGAAGCAC ATGAACTTTTTGAAACACTTCTGGGAAGGCGATCCGGACGAGATCAAACAGAAGAAAATCCGGCTCTTCGGAGCAGATCCTCCGATCCTCTACGTGCTCC ATTACTTGGGCACCAAGCCGTGGCTGTGCTTCCGGGACTACGATTGTAACTGGAACGTCGATATACTACAGGAGTTTGCGAGCGATGTGGCGCATAAGAC TTGGTGGAAGGTGCATGACGAGATGCCGGAGAACCTGCAGAAGTACTGTTTGTTGAGGTCGAAGCAGAAGGCGGCGTTGGAGTGGGATAGGAGGCAGGCG GAGAAAGGGAACTTTAGCGACGGACATTGGAGGATTGCGATTAAGGACAAGAGGTTGACGACTTGTTTCGAGGAGTTCTGCTACTGGGAAAGTATGCTGT GGCATTGGGGTGAGAAGAACTGGACTGATAATGCTACTACTACTGTGAGTTTGACTGCTCCTATAGTGGCGAATAATAATGTTACTGGTCAGTCTCTGGC TTCTCTGTGA
AA sequence Show only first row Show all	>Lus10018922 pacid=23144700 polypeptide=Lus10018922 locus=Lus10018922.g ID=Lus10018922.BGIv1.0 annot-version=v1.0 MPAGVVGTSGGSGGSSGATSPNSFEHRHRLSSSLSMGEDSPRRRFLRGRNFRDVEKAFHVPAQCRSLNCKTSTLRFVLLIIALGTLVTLYRSPAVHVTDY PHHLETHSPLVERWIREDVAEDPRYISTAEVDWDTVSNIFEKLNDTDQYQGIGLLNFNSSEVKTWKHFLPDVDHVVLQLDHVQKNVTWESLYPEWIDEEE DFKVPTCPPVPKIKFGGKPRIDVLAVKLPCNKSGGWSRDVASLHLQLAAASLASSGKSYHPVRVILITDCLPVPNLFTCKELNFREGNMWLYEPNPHRLR QKSQLPAGSCELSVPLNANEYFHSERPHREAYATILHSAQMYVCGAIVAAQSIRRAGSTRDLVILVDETISEYHRGGLEAAGWKVYTIQRIRNPKAERDA YNEFNYSKFRLWQLTDYDKIIFIDADMLILRNIDFLFEMPEITATGNDGTLFNSGVMVIEPSNCTFELLMDHINDIVSYNGGDQGYLNEIFTWWHRIPKH MNFLKHFWEGDPDEIKQKKIRLFGADPPILYVLHYLGTKPWLCFRDYDCNWNVDILQEFASDVAHKTWWKVHDEMPENLQKYCLLRSKQKAALEWDRRQA EKGNFSDGHWRIAIKDKRLTTCFEEFCYWESMLWHWGEKNWTDNATTTVSLTAPIVANNNVTGQSLASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10018922 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	5.9	0.7692
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	6.3	0.7664
AT3G06240			F-box family protein (.1)		Lus10029725 [exp]	41.7	0.6652
AT2G03640			Nuclear transport factor 2 (NT...		Lus10004644 [exp]	118.2	0.6848
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	167.6	0.6834
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	225.8	0.6587

Compare expression of checked genes

Lus10018922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.