Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77122 277 / 2e-91 Uncharacterised protein family UPF0090 (.1) AT1G69210 155 / 2e-44 Uncharacterised protein family UPF0090 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028624 [exp] 559 / 0 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10026674 [exp] 153 / 1e-44 AT1G69210 249 / 5e-83 Uncharacterised protein family UPF0090 (.1.2) Lus10014566 [exp] 91 / 9e-22 AT1G69210 120 / 7e-34 Uncharacterised protein family UPF0090 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071700 [exp] 304 / 3e-102 AT1G77122 271 / 6e-90 Uncharacterised protein family UPF0090 (.1) Potri.010G157300 [exp] 160 / 2e-46 AT1G69210 239 / 8e-78 Uncharacterised protein family UPF0090 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02576 [flax] [poplar] DUF150 RimP N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018923 pacid=23144644 polypeptide=Lus10018923 locus=Lus10018923.g ID=Lus10018923.BGIv1.0 annot-version=v1.0 ATGGCATCAACAAAATTTGCGGTTTTGCCACTGAGCCACTCCCGCCGCTTCAAGGACTATCGGTTATCACTTCTCCGAGCTTCAGCCATTTCCGGAGCAA GAAATTTGAATCTCCCACTCCCAGATACAAAAATGGAGACACTACTAAGCATACGAGTCTCGTCGTCGTTCTCGATTCCTCTGATCACTCTCTCAAACCG AAACTTCTCGTTCTCGTTTCTGACATTGACTTGCCGCCCTTTCCAAGCAAGTCGCGGGAAGCTCTGCGCGGCAGTTCCGGCCAAGAAGAAGAGCAGAGAA CCGCCGCCTCAGGTGGAGGAGCCAGTCATCGACCCAAGCATATTGGAAGAGGTGTTTTCAGCTGACAAGGATGACGACGAGGCAGAAGAAGAAGATATTC AACAGCTTCTCTTTGAGGACGACGAGTTTGACGATGACTTGATTGATGATGACGACGATGGTGATTTTGAAGATGAGTTTGAAGAGGAGGATGAACCGCA ACTTCAAGCTGGAGATGGGGCTGGAGGAGGAGGAATTGCCCTAGCTGGAACGTGGTGGGATAAGGAAGCTTTAGCTATAGCTGAGCAGGTTTGTCTGTCC TTCAATGGAGAACTGGGGATATATGCTTTCAAGACGCTGCTAAACGGCACAATCAGAGTTCGAATAGAGAGGCTTACTAATAAGTCTGGTTCTCCCAACA TGGAAGATGTTGAGGCTTTCGCTAGAACCTATAGAGCACGGCTAGATGAAGCTGAACTCGCTAAAGCTATACCCGAGAATACTACTCTAGAGGTATCATC TCCTGGTGTTGAGAGAGTGGTTCGGATCCCAGAAGACCTTGATCGATTCAAGGAACGGCCTATGTATGTCAAATATGTCAGCCAGGAAGAAGGGACAGAG TCTGCCTCAGAAAGTGATGGTGTTTTCAAGCTGGTTTTATTTGACTTGGAAATGAAATGTTGCACCTGGGGTATCGCAGATGTAAGGATGAACAGAGAAA AGGCAGGGAAGGGAAGACCACTTAACAAAAAGCAAAGAGAGTGGCGTCTGGATACACCTTTTGAGTCTTTGTGTCTAGTGCGCATACATTCTGAATGTTA A
AA sequence Show only first row Show all	>Lus10018923 pacid=23144644 polypeptide=Lus10018923 locus=Lus10018923.g ID=Lus10018923.BGIv1.0 annot-version=v1.0 MASTKFAVLPLSHSRRFKDYRLSLLRASAISGARNLNLPLPDTKMETLLSIRVSSSFSIPLITLSNRNFSFSFLTLTCRPFQASRGKLCAAVPAKKKSRE PPPQVEEPVIDPSILEEVFSADKDDDEAEEEDIQQLLFEDDEFDDDLIDDDDDGDFEDEFEEEDEPQLQAGDGAGGGGIALAGTWWDKEALAIAEQVCLS FNGELGIYAFKTLLNGTIRVRIERLTNKSGSPNMEDVEAFARTYRARLDEAELAKAIPENTTLEVSSPGVERVVRIPEDLDRFKERPMYVKYVSQEEGTE SASESDGVFKLVLFDLEMKCCTWGIADVRMNREKAGKGRPLNKKQREWRLDTPFESLCLVRIHSEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10004195 [exp]	3.7	0.7936
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	5.7	0.8657
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	13.3	0.8200
AT2G43630			unknown protein		Lus10010586 [exp]	16.3	0.7874
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	18.5	0.8489
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10005401 [exp]	23.2	0.7987
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	41.1	0.7012
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	44.2	0.7960
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10009589 [exp]	53.8	0.7878
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	105.9	0.7340

Compare expression of checked genes

Lus10018923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.