Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42240 685 / 0 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 657 / 0 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 629 / 0 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 587 / 0 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G33530 418 / 5e-143 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 408 / 3e-139 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT3G63470 347 / 1e-114 SCPL40 serine carboxypeptidase-like 40 (.1) AT5G23210 342 / 4e-113 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 340 / 2e-112 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G02110 339 / 4e-112 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028625 [exp] 902 / 0 AT5G42240 713 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10016722 [exp] 388 / 4e-131 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 384 / 3e-129 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 380 / 3e-128 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 358 / 2e-119 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 357 / 5e-119 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10041412 [exp] 354 / 4e-117 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10010331 [exp] 347 / 4e-115 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 345 / 3e-114 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071800 [exp] 700 / 0 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.005G187700 [exp] 509 / 6e-179 AT5G42240 554 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.012G105500 [exp] 411 / 2e-140 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 409 / 1e-139 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 400 / 4e-136 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 395 / 4e-134 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 382 / 3e-129 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 373 / 3e-125 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.016G034400 [exp] 369 / 1e-123 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 367 / 4e-123 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10018924 pacid=23144637 polypeptide=Lus10018924 locus=Lus10018924.g ID=Lus10018924.BGIv1.0 annot-version=v1.0 ATGGGTAGAAGTAGTAGGTCTTGGTTTGGTTTGACTGCAGCGTTCTTGCTGGTTGCTTTGTGCAATTTTGCTGAGTTGGAAGGTTACCCAGCTGAGGATC TCGTTGTGGACTTGCCTGGCCAGCCAAAAGTTGGGTTCAAGCAGTATGCTGGGTACGTTGATGTCGATACGAAGACTGGGAAGAGCCTGTTCTATTACTT TGTTGAAGCTGAAAAAGCTCCTCTAAGCAAGCCGCTCACTCTCTGGCTCAATGGAGGGCCTGGCTGCTCTTCGATTGGTGGAGGTGCATTCACGGAATTG GGTCCATTTTACCCCAAGGGTGATGCCAAAAGCCTTAGAAGAAACAGAATGTCATGGAACAAAGCGTCGAATATGCTGTTTGTTGAATCCCCTGCTGGAG TAGGATGGTCTTACTCAAACACCAGCTCTGATTACAATACTGGAGATGCTGCTACTGCCAAGGATATGCAGGTGTTCTTACTGAATTGGTTCTCAAAGTT CCCTGAGTACAAGACGTTACCATTCTTCCTCGCCGGAGAAAGCTATGCAGGACATTATATCCCTCAATTGGCTGAGTTACTTCTCGACCACAACGCACAT TCCAAAGGCTACAAGTTCAACTTCAAGGGTGTTGCAATTGGGAACCCACTTCTCAACCTAGACCAAGACGCCGGGTCTCCATACCAGTTCCTATGGTCTC ATGGGATGATGTCCGACGAGCTTCAACAATCGATCGCCAAGGAATGCGATTTCGACGACTACACTTTCGAGAACCCTCACAATCAGTCCTCCGAATGCAA TGCTGCTCTCTCGAGCGCAATGGACATCGTCGGAGAATACGTGAATAACTACGACGTCCTCCTCGATATCTGTTATCCCTCCATATTCGAGCAGGAACTC AGACTGAAGAAACTGGCCACGAAGATGAGTGTTGGAGTTGATGTGTGCATGAGCAGTGAAAGGAAACTGTACTTCAACCTCCCTGAAGTCCAGAAGGCAC TTCATGCCAATAGAACTAACCTTCCTCATCCATGGACCATGTGTAGCTCAAATTTGCAGTACAAGGAAACCGATGGTAACATCAACATTCTGCCAGTACT GAAGAAGATCATTCAGAATGGTATTCCAGTCTGGATTTTCAGTGGTGATCAAGATTCCGTCGTTCCATTAGTCGGATCGCGAACCCTCGTTCGCCAACTG GCCGAGGATCTCAACTTCAAAATCACAGTTCCATACACTGCTTGGTTCCACAAAAACCAGGTTGGTGGTTGGGTGACGGAATATGGCAACCTACTGACAT TTGCAACAGTGAGAGGAGCTGCACATATGGTTCCATATGCACAGCCGTCAAGAGCTCTGCATCTCTTCAGCGCGTTTCTACGCGGTGTCAAACTCCCCGA TCATCCCAGAATTTCAGAATAG
AA sequence Show only first row Show all	>Lus10018924 pacid=23144637 polypeptide=Lus10018924 locus=Lus10018924.g ID=Lus10018924.BGIv1.0 annot-version=v1.0 MGRSSRSWFGLTAAFLLVALCNFAELEGYPAEDLVVDLPGQPKVGFKQYAGYVDVDTKTGKSLFYYFVEAEKAPLSKPLTLWLNGGPGCSSIGGGAFTEL GPFYPKGDAKSLRRNRMSWNKASNMLFVESPAGVGWSYSNTSSDYNTGDAATAKDMQVFLLNWFSKFPEYKTLPFFLAGESYAGHYIPQLAELLLDHNAH SKGYKFNFKGVAIGNPLLNLDQDAGSPYQFLWSHGMMSDELQQSIAKECDFDDYTFENPHNQSSECNAALSSAMDIVGEYVNNYDVLLDICYPSIFEQEL RLKKLATKMSVGVDVCMSSERKLYFNLPEVQKALHANRTNLPHPWTMCSSNLQYKETDGNINILPVLKKIIQNGIPVWIFSGDQDSVVPLVGSRTLVRQL AEDLNFKITVPYTAWFHKNQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSAFLRGVKLPDHPRISE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	1.7	0.8919
AT3G24150			unknown protein		Lus10019404 [exp]	2.8	0.8469
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	4.9	0.8365
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	5.5	0.8333
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	5.7	0.8144
AT5G52950			unknown protein		Lus10027565 [exp]	6.3	0.8335
					Lus10025836 [exp]	6.6	0.7605
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	12.2	0.7724
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	13.2	0.7494
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	13.8	0.8112

Compare expression of checked genes

Lus10018924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.