Plant FIBer expression Database

Lus10018925 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43790 44 / 1e-06 TED6 tracheary element differentiation-related 6 (.1)
AT5G48920 44 / 4e-06 TED7 tracheary element differentiation-related 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028626
[exp]
122 / 6e-36 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1)
Lus10029760
[exp]
57 / 1e-10 AT1G43790 55 / 8e-10 tracheary element differentiation-related 6 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G072000
[exp]
80 / 1e-19 AT1G43790 47 / 2e-07 tracheary element differentiation-related 6 (.1)
Potri.007G108100
[exp]
74 / 6e-17 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1)
Potri.005G060700
[exp]
71 / 7e-16 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1)
PFAM info
Representative CDS sequence
>Lus10018925 pacid=23144733 polypeptide=Lus10018925 locus=Lus10018925.g ID=Lus10018925.BGIv1.0 annot-version=v1.0
ATGAAGATCGTCATCCTCGTGGTGTTCGTCTCCTTCGGTGGGATCTTCTTCTTGGGCGGCCTCGTGGCTGCCATATGTTGTTATTTAAGGAAGATGAAGA
AGGAGAAGAAGAAGATTCAGCATGAGACGACGGGTATTATCCATGTGGACGATCACAGGAGGGTGAAGGAAGCCATCGTCCCTGGACCCCACGGCCCACG
AGCCGTGGTGCTGGAGATCGACGATGACTTGCACGTCGACGGGGTGGTGAAGAAGGACGAGGTTGTGGAGAACATTCGCGGAGGTAAACATCACGAGCAC
GGACATGGTGGATGTGACATTACCACGGAAGTGGTCGGTTCGAGTTCTAATCAACAACGACCTAATGTTTAG
AA sequence
>Lus10018925 pacid=23144733 polypeptide=Lus10018925 locus=Lus10018925.g ID=Lus10018925.BGIv1.0 annot-version=v1.0
MKIVILVVFVSFGGIFFLGGLVAAICCYLRKMKKEKKKIQHETTGIIHVDDHRRVKEAIVPGPHGPRAVVLEIDDDLHVDGVVKKDEVVENIRGGKHHEH
GHGGCDITTEVVGSSSNQQRPNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G43790 TED6 tracheary element differentiat... Lus10018925
[exp]
0 1
AT3G62160 HXXXD-type acyl-transferase fa... Lus10004527
[exp]
1.0 0.9973
AT5G05950 MEE60 maternal effect embryo arrest ... Lus10016474
[exp]
2.2 0.9884
AT3G45010 SCPL48 serine carboxypeptidase-like 4... Lus10041339
[exp]
3.2 0.9905
AT4G18425 Protein of unknown function (D... Lus10013969
[exp]
3.5 0.9898
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Lus10013549
[exp]
4.2 0.9863
AT1G20850 XCP2 xylem cysteine peptidase 2 (.1... Lus10013204
[exp]
5.3 0.9893
AT3G27210 unknown protein Lus10011366
[exp]
5.5 0.9804
AT1G10460 GLP7 germin-like protein 7 (.1) Lus10029214
[exp]
5.5 0.9879
AT1G10460 GLP7 germin-like protein 7 (.1) Lus10010726
[exp]
6.9 0.9871
AT3G13650 Disease resistance-responsive ... Lus10039561
[exp]
7.1 0.9863

Lus10018925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.