Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43800 568 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02630 496 / 7e-176 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT2G43710 493 / 1e-174 FAB2, SSI2 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) AT5G16240 483 / 7e-171 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16230 477 / 2e-168 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02610 476 / 9e-168 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02620 466 / 4e-164 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028627 [exp] 676 / 0 AT1G43800 598 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10027486 [exp] 513 / 0 AT3G02630 649 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10039241 [exp] 509 / 0 AT3G02630 645 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187600 [exp] 578 / 0 AT1G43800 613 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.013G127300 [exp] 511 / 0 AT2G43710 696 / 0.0 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) Potri.010G179400 [exp] 505 / 2e-179 AT3G02630 640 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.008G077900 [exp] 502 / 2e-178 AT3G02630 657 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.002G209602 [exp] 471 / 3e-166 AT3G02630 592 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179500 [exp] 468 / 3e-165 AT3G02630 595 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF03405 [flax] [poplar] FA_desaturase_2 Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10018926 pacid=23144645 polypeptide=Lus10018926 locus=Lus10018926.g ID=Lus10018926.BGIv1.0 annot-version=v1.0 ATGCAAGCCACCCACCACGTCAGCGCCCACCGTCCAGCATGGATGCCACGTGGTGGCCGAACCACCTCCACCATCATCATGCACCTCTGCCCTCCACGCG CCGCCATCAAAACTGCTCCGCCGCCTCCCCCTCCGCTCACCCTGAAACACCAACACAAAACCCACACAATGCCGGCGGAGAAAATCGAGCTTTTCAAGTC CCTCGAGGATTGGGCCTCCGAGAATGTCCTCCCACTTCTCAAGCCCGTCAATAAATGCTGGCAGCCTCAGGACTTCCTCCCCGACCCGTCCCTCTCCGTC GCTGATTTCTCCGACGAGGTGAGGTTGTTGAGGGAAAGGACGGCGGAGCTACCGGACGAGTACTTCGTCGTCTTGGTGGGTGACATGATAACGGAGGATG CGTTACCGACGTACGAGACCATGATCAACACACTTGACGGCGTTAGGGACGAGACGGGCGCCAGTCAAAGCCCATGGGCCTTATGGACCCGGGCCTGGAC CGCCGAGGAGAATCGCCACGGCGATCTGCTTCGGACCTTTCTGTACCTATCGGGTCGGGTCGACATGAGGATGGTAGAAAGGACTGTTCAGTACCTCATT GGATCTGGCATGGACCCGGGCACAGAGAACAACCCGTACTTGGGGTTCGTGTACACGTCATTCCAGGAGCGAGCCACATTCATATCGCACGGCAACACGG CTCGGCTAGCCAAGGAGGGAGGGGATCCGGTACTCGCACGGATATGTGGCACCATAGCATCGGACGAAAAGCGACACGAGAACGCCTACACGCGCATAGT GGAGAAGCTCCTAGAGGTGGACCCGAACGGTGCGGTTTGTGCGGTGGCCGACATGATGCATAAGAAGATCACAATGCCGGCGCACCTGATGTACGACGGG GAGGACCCGAAGCTGTTCGAGCACTTCTCATCGGTGGCTCAGCGGCTCGGGGTGTACACCGCGCAGGACTACGCGGACATACTCGAGTTCTTGATCGGAC GGTGGGGGCTGGACAAGGTGGAGCAAGGGCTGGACGGTGAAGGGAGGCGGGCGCAGGATTTCGTGTGTGGGCTGCCACGGAGGATCATGCGGCTCCAGGA GCGAGCCGATGAGAAGGCTAAGAAGATGAAGAAGCCGGAAGCAGTCAAGTTTAGCTGGATTTTCAAACGGCAAGTCGTTTTGTGA
AA sequence Show only first row Show all	>Lus10018926 pacid=23144645 polypeptide=Lus10018926 locus=Lus10018926.g ID=Lus10018926.BGIv1.0 annot-version=v1.0 MQATHHVSAHRPAWMPRGGRTTSTIIMHLCPPRAAIKTAPPPPPPLTLKHQHKTHTMPAEKIELFKSLEDWASENVLPLLKPVNKCWQPQDFLPDPSLSV ADFSDEVRLLRERTAELPDEYFVVLVGDMITEDALPTYETMINTLDGVRDETGASQSPWALWTRAWTAEENRHGDLLRTFLYLSGRVDMRMVERTVQYLI GSGMDPGTENNPYLGFVYTSFQERATFISHGNTARLAKEGGDPVLARICGTIASDEKRHENAYTRIVEKLLEVDPNGAVCAVADMMHKKITMPAHLMYDG EDPKLFEHFSSVAQRLGVYTAQDYADILEFLIGRWGLDKVEQGLDGEGRRAQDFVCGLPRRIMRLQERADEKAKKMKKPEAVKFSWIFKRQVVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	3.0	0.9786
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	3.9	0.9708
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	4.0	0.9668
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	4.9	0.9613
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	5.1	0.9732
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	6.0	0.9568
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	6.7	0.9587
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	7.5	0.9696
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	7.7	0.9687
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	8.4	0.9674

Compare expression of checked genes

Lus10018926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.