Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02680 159 / 2e-51 TAF13 TBP-associated factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028629 [exp] 250 / 4e-87 AT1G02680 166 / 2e-54 TBP-associated factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122500 [exp] 180 / 2e-59 AT1G02680 169 / 2e-55 TBP-associated factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02269 [flax] [poplar] TFIID-18kDa Transcription initiation factor IID, 18kD subunit
Representative CDS sequence Show only first row Show all	>Lus10018927 pacid=23144740 polypeptide=Lus10018927 locus=Lus10018927.g ID=Lus10018927.BGIv1.0 annot-version=v1.0 ATGAGCACTTCCGGAACTCCTGGACAGGCAACCAAATCCGCAAAGGTTGCTGGCCCTTCGTCACACTCGTCGGAACCATCTACTAAGAGGAAACGAGGAG TCTTCCAGAAAGATCTGCAGCACATGATGTATGGATTTGGAGACGATCCTAATCCGCTTCCGGAAAGTTTAGCACTTTTGGAGGACATTGTTGTAGAGTA TGTCACTGATCTGATCATAATCAGTGTTACTTGCTCCATTGCTGTAAAGACACATAAAGCACTTGACGTAGGATCGAAAAGGGCGAGAATATCAGTCGAG GATTTCCTGTACTTGATTCGCAAGGACCCACCGAAGCTCAACAGATGTACGGAACTGCTGTCAATGCAAGAGGAGCTGAAACAAGCAAGGAAAGCTTTTG ATATGGACGACGAGAAACGGGTGCTTGAGTGA
AA sequence Show only first row Show all	>Lus10018927 pacid=23144740 polypeptide=Lus10018927 locus=Lus10018927.g ID=Lus10018927.BGIv1.0 annot-version=v1.0 MSTSGTPGQATKSAKVAGPSSHSSEPSTKRKRGVFQKDLQHMMYGFGDDPNPLPESLALLEDIVVEYVTDLIIISVTCSIAVKTHKALDVGSKRARISVE DFLYLIRKDPPKLNRCTELLSMQEELKQARKAFDMDDEKRVLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10018927 [exp]	0	1
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	3.2	0.9152
AT4G32960			unknown protein		Lus10007456 [exp]	7.5	0.8977
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	10.0	0.9011
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	10.7	0.9037
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	11.4	0.9064
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	12.8	0.9005
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	14.7	0.8849
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	15.5	0.8796
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	17.2	0.8908
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	17.7	0.8842

Compare expression of checked genes

Lus10018927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.