Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08350 1187 / 0 GTA2, GTA02 global transcription factor group A2 (.1) AT2G34210 984 / 0 Transcription elongation factor Spt5 (.1) AT5G04290 207 / 2e-54 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) AT4G08360 101 / 8e-25 KOW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028630 [exp] 1610 / 0 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1) Lus10038680 [exp] 218 / 8e-58 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10037946 [exp] 218 / 9e-58 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124200 [exp] 1282 / 0 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1) Potri.004G162500 [exp] 1279 / 0 AT4G08350 1394 / 0.0 global transcription factor group A2 (.1) Potri.010G228766 [exp] 223 / 2e-62 AT5G04290 606 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.008G032800 [exp] 224 / 2e-59 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11942 [flax] [poplar] Spt5_N Spt5 transcription elongation factor, acidic N-terminal CL0439 [flax] [poplar] NusG-like PF03439 [flax] [poplar] Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Representative CDS sequence Show only first row Show all	>Lus10018928 pacid=23144664 polypeptide=Lus10018928 locus=Lus10018928.g ID=Lus10018928.BGIv1.0 annot-version=v1.0 ATGTCGCGGAGGAGAGACGACGACGATGATTTTGATGACGAGGAGTACGAGGACCAGGAGGATCAGCTCCTGGACGACGAAGATGAAGAGTACGATGCTA TGGAGGAAAAACAAGGTCGGAGCGACCACAAAAAGAGGTCCCGATCGAGTTTTATAGATGACGCGGCGGAGGAGGATGAGGATGAGGAGGAAGAGGATGA CGACGATGAGTACTACGGTGGTAGAGGAGGAGGCGGTGGGGCGAGCAGGAAGAAGAAGGCTAAGAGGAAGGGAGCGTCTTTCTTTGATCTCGAGGCTGTG GTGGATAGCGATGAGGACGAAGAGGAAGATATCGGCGGCGATGACGACTTCATTGTTGATACTGGAGCTGACATACCTGAAGAAGGTGGTAGACGGGCTC GCAGTAGACCACTCCTTTCTCAGGAAGATGAGCATGAAGATATGGAAGTAATTGAAAGACGAATTCAGGAAAGATATTCAAGACAATCTCACGGAGAATA CGATGAGGAGACAACAGAAGTAGAACAACAGGCTCTCTTGCCGTCTGTACGGGATCCGAAGTTGTGGATGGTGAAATGTGCGATTGGGCGTGAGCGAGAG ACAGCAGTATGCCTTATGCAAAAGTGCATCGATAAAGGTGGTGAATTGCAAATCAGGTCTGCTATTGCCCTTGAGCATCTCAAGAATTTTATATATATTG AAGCTGACAAAGAAGCCCACGTGAGGGAGGCATGCAAAGGGCTGAGGAATATATTTGCTTCTCAGAAGCCCATGCTTGTTCCAATCAAAGAAATGACTGA TGTCCTTTCTGTTGAAAGCAAAGTAATTGATCTTGCAAGGGATACTTGGGTCAGGATGAAGATTGGAACTTACAAAGGGGACCTTGCCAAAGTGGTCGAT GTGGACAATGTGCGACAGAGAGTCACGGTGAAGGTCATTCCTAGGGTTGACTTGCAGGCTCCTGCCCGTAAAATGGAAGGACGCGAAGTCGTAAAAAAGA AGGCATTTGTTCCTCCTCCTCGCTTCATAAATTTGGATGAGGCTAGGGAACTGCATATTCGTGTAGAGCGAAGAAGAGATCCGATGACTGGCGACTATTT TGAGAATATCGCTGGCATGATGTTCAAAGATGGATTCTTGTACAAAACTGTGTCAATGAAGTCAATTAGTGCTTCAAACATCAAGCCAACTTTCGATGAA CTTGAAAAGTTCCGTAAACCTGGAGAAAACGGTGATGTTGATGCCAGCTTGTCAACCCTGTTTTCCAACCGAAAGAAAGGGCACTTTTTGAAGGGCGATG CTGTTATCGTTGTTAAAGGAGATCTGAAAAATCTCAAGGGATGGGTTGAGAAGGTCGAGGAAGATAATGTTCATATCAGACCTGAGGAGAAGGGCCTTCC TAAAACACTTACAGTACATGAAAAAGAGCTCTGCAAATATTTCGAACCTGGTAACCATGTGAAAATAGTCGCTGGCACTCAAGCAGGTGCAACCGGGATG GTTGTCAAGGTTGAGCAACATGTGCTCATTATTCTGTCGGATACGACGAAGGAACATATTCACGTATTCTCTGATGATGTTGTTGAAAGCTCAGAGGTAA CTACTGGTGTTACAAAAATCGGTGACTATGAGCTTCATGACCTTGTTGTGCTGGATAATAACACTTTCGGGATCATAATACGTGTGGAAAGTGAGGCCTT CCAGGTTCTCAAAGGAGTTCCAGAAAGATCAGAGGTCTCTCTAGTACCATTGAGAGAGATTAAAAGCAAGGTTGAGAGGAAGTTTGAAGTATCAGATAGA TACGGAAGTAAAATATCAGTCAAAGATGTTGTTAAAGTCATCGACGGTCCTTGCCAAGGAAAGCAGGGTCCCGTTGAGCACATATACAAGCAAATATTGT TCATCCATGACCGTCATCACCTTGAACACGCTGGATTTATCTGTGCTAAGGCCCAAGCTTGTGGTCTGGTTGGAGGATCACGTTCTAATGGTAACCGGAA TGGCAATGGGTACTCGAGGTTTGGCGGCAATAAAAATGGTCCTCCAATCCCCCCTTCACCTCGGAGATTTCAAAGAGGTGGCCCTCCTTTCGAGTTCGGA GGAAGGAATAGAGGCGGACGGGGAAGGGGAGGGCAGGATTCCTTGATAAACACCACCATCAAGATTCGGCAAGGGCCTTACAAAGGTTACCGTGGACGTG TGAAGGACATCAAGGATCAAACAGTCCGAGTCGAGTTAGAGTCTCAAATGAAGGTGATCACAGGCAAGTACCTTGATCGCAGTTTTATATCGGACAACGT GATGGTTTCCACACCACTCCGCGATCAAAATCGATATGGCATGGGAAGCGAAACCCCCATGCATCCTTCTCGGACTCCGTTGCATCCTTATATGACTCCT ATGCGAGATTCTGGCGCAACGCCTATTCACGATGGCATGAGAACGCCTATGCGCGACAAAGCATGGAATCCTTACGCTCCGATGAGTCCTCCTCGAGACA ACTGGGAAGATGGAAATCCGGCATCTTGGGGAACTAGTCCCCAGTATCAGCCAGGAACCACTCCTTCGAGATCGTACGAAGCACCAACACCTGGTGGGAA TTACAGCGATGCCGGGACACCGAGGGACAGCAGCTCTTCATACGCAAATGCTCCCAGCCCGTACGTACCGTCTACTCCTGGTGGCCAGCCTATGACACCC GGCTCAGCATCGTATCTCCCCGGAACTCCTGGTGGCCAGCCAATGACTCCCGGAGGCGGTTTGGATGTCATGTCTCCTGTTTTAGGGGACAATGATGGAG CGAGTGTGATGCCGGATATACTGGTGAACGTACATAGAGGCGATGATTCTGATGTCGGTATCGTCAGAGAGGTCCATCCGGACGGATTGTGCAAGATACG GTTGGTGGACACGGGAGACACGGTGAACGCGATGTTGAGCGAGGTGGACATTGTGGCGCCGAGGAAATCGGACAAGGTGAAGATAACGGGAGGGGTCCAC CGGGGGCTGACGGCAAAGTTGATCGGTGTGGACGGGACAGATGGGATTGTGAAGCTCGACGATACTCTTGATGTGGTGATTCTAGACATGGTTGTACTTG CTAAATTAGCTTAG
AA sequence Show only first row Show all	>Lus10018928 pacid=23144664 polypeptide=Lus10018928 locus=Lus10018928.g ID=Lus10018928.BGIv1.0 annot-version=v1.0 MSRRRDDDDDFDDEEYEDQEDQLLDDEDEEYDAMEEKQGRSDHKKRSRSSFIDDAAEEDEDEEEEDDDDEYYGGRGGGGGASRKKKAKRKGASFFDLEAV VDSDEDEEEDIGGDDDFIVDTGADIPEEGGRRARSRPLLSQEDEHEDMEVIERRIQERYSRQSHGEYDEETTEVEQQALLPSVRDPKLWMVKCAIGRERE TAVCLMQKCIDKGGELQIRSAIALEHLKNFIYIEADKEAHVREACKGLRNIFASQKPMLVPIKEMTDVLSVESKVIDLARDTWVRMKIGTYKGDLAKVVD VDNVRQRVTVKVIPRVDLQAPARKMEGREVVKKKAFVPPPRFINLDEARELHIRVERRRDPMTGDYFENIAGMMFKDGFLYKTVSMKSISASNIKPTFDE LEKFRKPGENGDVDASLSTLFSNRKKGHFLKGDAVIVVKGDLKNLKGWVEKVEEDNVHIRPEEKGLPKTLTVHEKELCKYFEPGNHVKIVAGTQAGATGM VVKVEQHVLIILSDTTKEHIHVFSDDVVESSEVTTGVTKIGDYELHDLVVLDNNTFGIIIRVESEAFQVLKGVPERSEVSLVPLREIKSKVERKFEVSDR YGSKISVKDVVKVIDGPCQGKQGPVEHIYKQILFIHDRHHLEHAGFICAKAQACGLVGGSRSNGNRNGNGYSRFGGNKNGPPIPPSPRRFQRGGPPFEFG GRNRGGRGRGGQDSLINTTIKIRQGPYKGYRGRVKDIKDQTVRVELESQMKVITGKYLDRSFISDNVMVSTPLRDQNRYGMGSETPMHPSRTPLHPYMTP MRDSGATPIHDGMRTPMRDKAWNPYAPMSPPRDNWEDGNPASWGTSPQYQPGTTPSRSYEAPTPGGNYSDAGTPRDSSSSYANAPSPYVPSTPGGQPMTP GSASYLPGTPGGQPMTPGGGLDVMSPVLGDNDGASVMPDILVNVHRGDDSDVGIVREVHPDGLCKIRLVDTGDTVNAMLSEVDIVAPRKSDKVKITGGVH RGLTAKLIGVDGTDGIVKLDDTLDVVILDMVVLAKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	0	1
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	1.0	0.9180
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	4.9	0.8728
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	6.9	0.8092
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	9.5	0.7969
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	11.7	0.8627
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	14.9	0.8179
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	15.4	0.8333
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10023169 [exp]	15.7	0.7994
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	16.5	0.7898
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	16.9	0.8326

Compare expression of checked genes

Lus10018928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.