Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77100 300 / 1e-100 Peroxidase superfamily protein (.1) AT4G25980 296 / 2e-98 Peroxidase superfamily protein (.1) AT2G41480 252 / 1e-81 Peroxidase superfamily protein (.1) AT5G64120 228 / 1e-72 Peroxidase superfamily protein (.1) AT5G39580 224 / 3e-71 Peroxidase superfamily protein (.1.2) AT5G19880 221 / 1e-69 Peroxidase superfamily protein (.1) AT5G06730 204 / 8e-63 Peroxidase superfamily protein (.1) AT1G14550 202 / 2e-62 Peroxidase superfamily protein (.1) AT1G05240 199 / 4e-61 Peroxidase superfamily protein (.1) AT1G05250 199 / 4e-61 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028631 [exp] 538 / 0 AT1G77100 328 / 6e-112 Peroxidase superfamily protein (.1) Lus10007051 [exp] 251 / 1e-81 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10015555 [exp] 244 / 7e-79 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10007052 [exp] 243 / 4e-78 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10012684 [exp] 227 / 5e-72 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 219 / 1e-68 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10020097 [exp] 204 / 4e-63 AT2G24800 412 / 3e-145 Peroxidase superfamily protein (.1) Lus10024209 [exp] 202 / 3e-62 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10026903 [exp] 199 / 3e-61 AT2G24800 418 / 2e-147 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069600 [exp] 249 / 1e-80 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 237 / 4e-76 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 237 / 7e-76 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 219 / 5e-69 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 219 / 8e-69 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 215 / 2e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 215 / 2e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 215 / 2e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 215 / 2e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.018G015500 [exp] 214 / 7e-67 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10018929 pacid=23144652 polypeptide=Lus10018929 locus=Lus10018929.g ID=Lus10018929.BGIv1.0 annot-version=v1.0 ATGCTCTGTTTCACTTCAAACCCTCTGTTTCTCTCCTTCTTCCTCTTTCTCCACTCTCTCCTCCTGGCCGGCTCAAATGGTCAGCTCCAGTTCGGCTTCT ACGACAACTCCTGCCCTGCCGCCGAGCAAGTCGTCTTCAACACTGTCAAGCAAGCCAGCCTCTCCGAACCCCGCACTGCCGCCCGCCTCCTCCGCCTCTC CTTCCATGACTGCTTCGTCGAGGGTTGTGACGGCTCGATATTGCTGAACGGCGGGGAGCAGAGTGCGTTTGGGAATCAAGGGCTGGGATCGTTTGATGTG ATCGAAACGGCTAAAGAACGGCTGGAGAATCTGTGCCCTGGAGTCGTCTCTTGCGCGGACATTGTGGCTTTAGCTGCTCGTGACGCCATCACCTTGAGTC ATGGGCCAACTTTTAACATTCCGACAGGGAGAAGAGACGGCAGAGTTAACGATGTTAACAATGCTGCCAGTTTGCCGGACGTTAAGGATTCCGCTGATGT TATGATCGAAAAGTTCCGTCAGAAAGGATTGTCCGTTAAAGATCTCGTCCTTCTCACCGCAGGTACGGCGACTACGACGACGTATTTAGGATTCGAGACC GATCGAACAACATTTTCGGCTAAACTCGACTCTGTTTGTCGTATTTCAGGAGGGCACACAATTGGGACGACTGCGTGTTTCTTCGTGAAGGACCGGCTCT ACGAGTTCAGACCTCCGACGACCCCAACCGACCCGACCATCAACCCAGAGCTCCTGCGGGAGCTAGAAAGGATGTGCCCGAAAGGGGGCGACGTCAACGA CCGAGTGCGTATGGACTGGTCGACACCGGACGCGATGGACGACCAGATTATTCGCAACATCCAACAAGGGTTCGCCGTGCTGGCATCCGACGCAAGGCTG GCCGATAACGGTGAAGCAGTCGATATTATGAATTCTTACTTGAGTACCAACAATGCGACGGCGTTTATCTTCGACTTTGCCGAGGCCATGGTGAAAATGG GGACCATGGCGGTTAAAACGGGGACTCAGGGTGAAATCAGGAGGAAATGCAACGTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10018929 pacid=23144652 polypeptide=Lus10018929 locus=Lus10018929.g ID=Lus10018929.BGIv1.0 annot-version=v1.0 MLCFTSNPLFLSFFLFLHSLLLAGSNGQLQFGFYDNSCPAAEQVVFNTVKQASLSEPRTAARLLRLSFHDCFVEGCDGSILLNGGEQSAFGNQGLGSFDV IETAKERLENLCPGVVSCADIVALAARDAITLSHGPTFNIPTGRRDGRVNDVNNAASLPDVKDSADVMIEKFRQKGLSVKDLVLLTAGTATTTTYLGFET DRTTFSAKLDSVCRISGGHTIGTTACFFVKDRLYEFRPPTTPTDPTINPELLRELERMCPKGGDVNDRVRMDWSTPDAMDDQIIRNIQQGFAVLASDARL ADNGEAVDIMNSYLSTNNATAFIFDFAEAMVKMGTMAVKTGTQGEIRRKCNVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77100			Peroxidase superfamily protein...		Lus10018929 [exp]	0	1
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	3.6	0.8771
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	7.5	0.8213
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	8.7	0.8442
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	12.4	0.8298
					Lus10022721 [exp]	12.6	0.8282
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	18.0	0.8294
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	18.2	0.8256
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	21.0	0.8184
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	21.2	0.8221
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	22.5	0.8022

Compare expression of checked genes

Lus10018929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.