Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21480 590 / 0 Exostosin family protein (.1.2) AT5G22940 87 / 1e-18 F8H FRA8 homolog (.1) AT2G35100 87 / 1e-18 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G16890 85 / 6e-18 Exostosin family protein (.1) AT4G16745 80 / 3e-16 Exostosin family protein (.1.2) AT5G19670 80 / 3e-16 Exostosin family protein (.1) AT5G44930 79 / 4e-16 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT3G57630 78 / 1e-15 exostosin family protein (.1.2) AT4G38040 77 / 2e-15 Exostosin family protein (.1) AT5G61840 77 / 3e-15 GUT1, IRX10-L Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028632 [exp] 694 / 0 AT1G21480 704 / 0.0 Exostosin family protein (.1.2) Lus10011121 [exp] 92 / 3e-20 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 87 / 1e-18 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10043239 [exp] 87 / 1e-18 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 87 / 2e-18 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10012973 [exp] 86 / 7e-18 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 84 / 1e-17 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10034951 [exp] 83 / 3e-17 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 82 / 6e-17 AT5G16890 679 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187400 [exp] 619 / 0 AT1G21480 714 / 0.0 Exostosin family protein (.1.2) Potri.002G072300 [exp] 616 / 0 AT1G21480 695 / 0.0 Exostosin family protein (.1.2) Potri.019G049800 [exp] 90 / 1e-19 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 86 / 2e-18 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.015G124800 [exp] 86 / 2e-18 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 84 / 1e-17 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 81 / 9e-17 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 81 / 1e-16 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 81 / 1e-16 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 81 / 2e-16 AT1G27440 705 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10018930 pacid=23144764 polypeptide=Lus10018930 locus=Lus10018930.g ID=Lus10018930.BGIv1.0 annot-version=v1.0 ATGCGCGGCCGTGACGGGAAAATCGCCGCGGAAGCTTGCGTCAAAGGCCAGTGGGGCACTCAGGTTAAGATACACAAGTTGCTATTGAAATCGAGATTTC GGACTAAGAAGAAAGAGGATGCGGATTTGTTCTTCGTGCCGACGTACGTGAAATGTGTTCGGATGATGGGAGGGCTTACTGATAAAGAGATCAACCAAAC GTTCGTTAGAGTCTTGAGCCAAATGCCTTACTTCAGAAGATCTGGTGGTCGGGATCACATTTTCGTATTCCCCAGTGGAGCAGGAGCTCATTTGTTTCGA TCATGGGCTACGTTCATTAATCGTTCGATAATCCTTACACCAGAGGGTGACCGAACTGATAAGAAGGATACAACTGCATTCAATACCTGGAAAGATATAA TCATCCCTGGAAATGTCGAAGATGGAATGACTATAAGAAAACCTGCGACAGTCGACCCTTTACCTTTGTCCAAGAGGAAGTACTTGGCGAATTATCTAGG TCGAGCACAGGGAAAAGCTGGCCGTCTTAAGCTCATTGAGCTTTCAAAGCAGTATCCAGATAAGCTGGAATGTCCAGACCTGAAGTTCAGTGGATCTGAT AAATTCGGAAGGGCTGAATACTTTGAACATCTACGCAATGCAAAGTTCTGTCTTGCCCCGCGCGGCGAATCGTCCTGGACCCTTCGCTTTTACGAATCTT TCTTTGTGGAGTGTGTACCAGTTATTTTATCAGACCAGGCGGAGTTCCCTTTCCAAAACGTGATCGACTACACCCAGATATCTATCAAATGGCCATCCAC ACGAATCGGCCTCGAACTTTTGGAGTACCTCGAGTCCATACCAGAAGAGGAGATCGAGAGGATGATAGCGAACGGTAGGAGGATACGGTGCTTGTGGGTG TATGGATCGGTGTCTGAGCCGTGTTCGACGATGCTAGGGATCATGTGGGAACTTCAGAGGAAAGTGAGGCAGTTCCACCAGTCGCACGAAACGTTCTGGC TTCACAATCGAACGGTAGTTAACCGAAATCTGGTCGAGTTCTCAAAATGGAAGCCTCCCATGTATCTTCCCTGA
AA sequence Show only first row Show all	>Lus10018930 pacid=23144764 polypeptide=Lus10018930 locus=Lus10018930.g ID=Lus10018930.BGIv1.0 annot-version=v1.0 MRGRDGKIAAEACVKGQWGTQVKIHKLLLKSRFRTKKKEDADLFFVPTYVKCVRMMGGLTDKEINQTFVRVLSQMPYFRRSGGRDHIFVFPSGAGAHLFR SWATFINRSIILTPEGDRTDKKDTTAFNTWKDIIIPGNVEDGMTIRKPATVDPLPLSKRKYLANYLGRAQGKAGRLKLIELSKQYPDKLECPDLKFSGSD KFGRAEYFEHLRNAKFCLAPRGESSWTLRFYESFFVECVPVILSDQAEFPFQNVIDYTQISIKWPSTRIGLELLEYLESIPEEEIERMIANGRRIRCLWV YGSVSEPCSTMLGIMWELQRKVRQFHQSHETFWLHNRTVVNRNLVEFSKWKPPMYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21480			Exostosin family protein (.1.2...		Lus10018930 [exp]	0	1
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	5.2	0.9300
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	9.3	0.9356
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	10.5	0.9360
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	11.1	0.9344
AT1G45688			unknown protein		Lus10029743 [exp]	15.6	0.9320
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	19.0	0.9305
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	19.1	0.9308
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	21.4	0.9316
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	22.5	0.9319
AT1G65900			unknown protein		Lus10007381 [exp]	23.5	0.9256

Compare expression of checked genes

Lus10018930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.