Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G56650 86 / 1e-19 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT2G39470 45 / 1e-05 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G63540 44 / 1e-05 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G55330 44 / 5e-05 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028633 [exp] 482 / 4e-175 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10042812 [exp] 89 / 9e-21 AT3G56650 346 / 3e-121 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10029785 [exp] 88 / 1e-20 AT3G56650 343 / 4e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10016419 [exp] 59 / 4e-10 AT3G63540 243 / 1e-82 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10023436 [exp] 53 / 5e-08 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10040314 [exp] 52 / 5e-08 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10030326 [exp] 42 / 0.0002 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072400 [exp] 363 / 8e-128 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.006G034300 [exp] 87 / 9e-20 AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.010G210000 [exp] 50 / 3e-07 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.009G062500 [exp] 49 / 9e-07 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.010G210200 [exp] 40 / 0.0007 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10018931 pacid=23144714 polypeptide=Lus10018931 locus=Lus10018931.g ID=Lus10018931.BGIv1.0 annot-version=v1.0 ATGGGTACAACGAGCTTATTCACAGTCTCCAGCAGCTTCCCGCCGTTAGCCTGCAGCAGAGCTCACCGCCACCGCCGGCAATTAGTTCCTCGAGCTGATT CCGATGGATCCGTGAAGGTAACCAGTAGGAGGTCGGTTTTGGGAACAGGGGCTTTCTTAATTTGGTCTGTTAATGGCTGTGGGGAAGGGATTGCGGTAGT GAAACAGGGGCTTTTGGCTGGCAGGATACCTGGCTTATCGGAGCCTGATGAACAAGGTTGGAGGACATACAGAAGGCCAGATGAGAAGTCTGGAGGGCAC GGTGTTGGTTGGAGTCCCATCATTCCTTACGCCTTCTCTGTGCCTCAGGAATGGGAAGAGGTTCCAGTATCAATAGCCGACCTTGGAGGGACGGAGATCG ATTTGAGATTCGCAAGCTCGAAGGAAGGACGTGCATTTGTTATTGTTGCCCCAGTTCTCCGATTCGCAGATAATTTGGGTGACAACGTTAGGATCGAGCA AATCGGGACGCCCGAGAAGGTGATCAACGCATTCGGGCCAGAAGTGGTGGGGGAGAACGTGGAAGGGAAAGTCCGGAGCATGAGCGTAGAGGAACACGAA GGAAGGACCTATTACCAGTTCGAACTCGAGCCGCCTCACGTACTGATCACTGCAACTGCAGCTGGGAACCGCCTTTACTTGTTCAATGTCACTGCAAACA GTCTTCAATGGAAGAGGCATTTCCAGGATTTGAAGAAGATTGCCGACTCCTTTCGTGTTGTCTAA
AA sequence Show only first row Show all	>Lus10018931 pacid=23144714 polypeptide=Lus10018931 locus=Lus10018931.g ID=Lus10018931.BGIv1.0 annot-version=v1.0 MGTTSLFTVSSSFPPLACSRAHRHRRQLVPRADSDGSVKVTSRRSVLGTGAFLIWSVNGCGEGIAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGH GVGWSPIIPYAFSVPQEWEEVPVSIADLGGTEIDLRFASSKEGRAFVIVAPVLRFADNLGDNVRIEQIGTPEKVINAFGPEVVGENVEGKVRSMSVEEHE GRTYYQFELEPPHVLITATAAGNRLYLFNVTANSLQWKRHFQDLKKIADSFRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	0	1
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	1.0	0.9679
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	2.8	0.9521
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	3.0	0.9380
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	3.3	0.9365
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	3.5	0.9430
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	3.9	0.9498
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	3.9	0.9459
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	4.9	0.9360
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	4.9	0.9241
AT1G64680			unknown protein		Lus10001667 [exp]	4.9	0.9461

Compare expression of checked genes

Lus10018931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.