Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21460 324 / 6e-113 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G10850 185 / 5e-58 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G53190 181 / 3e-56 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT1G66770 176 / 2e-54 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G62850 171 / 6e-53 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT3G14770 165 / 2e-50 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G40260 153 / 1e-45 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT3G16690 151 / 3e-45 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT4G15920 147 / 2e-43 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G50800 147 / 1e-42 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028634 [exp] 391 / 3e-139 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10014932 [exp] 179 / 6e-56 AT5G53190 295 / 6e-101 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 179 / 8e-56 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 169 / 1e-51 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 167 / 3e-51 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 167 / 3e-51 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 161 / 1e-48 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10023249 [exp] 159 / 1e-47 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 158 / 2e-47 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187300 [exp] 324 / 5e-113 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 303 / 2e-104 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 303 / 2e-104 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 302 / 3e-104 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 179 / 7e-56 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 174 / 5e-54 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 172 / 3e-53 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 171 / 1e-52 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 166 / 8e-51 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.012G031400 [exp] 162 / 4e-49 AT5G53190 310 / 3e-107 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10018932 pacid=23144703 polypeptide=Lus10018932 locus=Lus10018932.g ID=Lus10018932.BGIv1.0 annot-version=v1.0 ATGAACGACATTCCTCACTTCATCTTCGGAGTTCTCGGGAATGCCTTCGCCGCTTTCCTCTTCCTCGCACCAACGATTACTTTCAGGCGGATAATCAAGA ACAAGTCGACTGAAGAATTCTCCGGCGTGCCGTACCCGATGACCTTACTCAACTGCCTCCTCTCGGCGTGGTACGGCCTCCCTTTCGTCTCCAAGGACAA CCTCCTGGTGACCACGATCAACGGCGCCGGAGCGGCAATCGAGATAATCTACGTGCTAATATTCCTGGTGTTCGCTCCCAAGAAGGAGAAGGCCAAGATC GGCGGGATATTCGCCGCTGTGCTCTCAGTTTTCGCCGCCGTGGCCCTCATCTCCTTCCTCGCCCTCCACGGCAACACCCGCAAGCTCTTCTGCGGCACCG CTGCCACCGTCTTCTCCATCATCATGTACGCTTCGCCTCTTTCCATCATGAGGGTGGTGATCAAGACAAAGAGCGTGGAGTTCATGCCATTCTTCCTCTC ACTCTTCGTCTTCCTATGTGGCACTTCCTGGTTCGTCTACGGCCTCCTCGGCCGTGATCCTTTCGTTGCCATACCGAATGGGTTCGGATGTGCATTGGGG CTAATGCAGCTGATCTTGTACTTCATCTACCGCAACCACGACAAGAAGAAAGCAGAGAAGCAGGGATCGTCGGCCATGGAGATGGGTTCCCAGAAGCCGA AACGAGATGCTGGAGCTAACGGTACCGACAACAATAACCATGCCACGGTGTGA
AA sequence Show only first row Show all	>Lus10018932 pacid=23144703 polypeptide=Lus10018932 locus=Lus10018932.g ID=Lus10018932.BGIv1.0 annot-version=v1.0 MNDIPHFIFGVLGNAFAAFLFLAPTITFRRIIKNKSTEEFSGVPYPMTLLNCLLSAWYGLPFVSKDNLLVTTINGAGAAIEIIYVLIFLVFAPKKEKAKI GGIFAAVLSVFAAVALISFLALHGNTRKLFCGTAATVFSIIMYASPLSIMRVVIKTKSVEFMPFFLSLFVFLCGTSWFVYGLLGRDPFVAIPNGFGCALG LMQLILYFIYRNHDKKKAEKQGSSAMEMGSQKPKRDAGANGTDNNNHATV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	0	1
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	2.2	0.9082
AT3G63430			unknown protein		Lus10024836 [exp]	2.4	0.9371
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	2.4	0.9347
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	4.5	0.9244
AT4G34760			SAUR-like auxin-responsive pro...		Lus10007553 [exp]	5.7	0.8863
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	8.9	0.8650
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	9.3	0.9253
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	9.8	0.8589
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	10.1	0.9007
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10001817 [exp]	11.2	0.8701

Compare expression of checked genes

Lus10018932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.