Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 425 / 8e-140 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 281 / 1e-85 SLK2 SEUSS-like 2 (.1.2) AT4G25515 268 / 1e-81 SLK3 SEUSS-like 3 (.1) AT4G25520 267 / 1e-80 SLK1 SEUSS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028635 [exp] 653 / 0 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 485 / 1e-162 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10042785 [exp] 484 / 2e-162 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 282 / 2e-85 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10006324 [exp] 184 / 1e-51 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10015002 [exp] 183 / 8e-50 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10029594 [exp] 114 / 2e-26 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10029753 [exp] 94 / 1e-23 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072900 [exp] 479 / 3e-160 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 469 / 3e-156 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 387 / 1e-125 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.012G136100 [exp] 296 / 2e-90 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 295 / 2e-90 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 248 / 8e-74 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.013G089900 [exp] 82 / 7e-18 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 75 / 3e-14 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018933 pacid=23144710 polypeptide=Lus10018933 locus=Lus10018933.g ID=Lus10018933.BGIv1.0 annot-version=v1.0 ATGCAGCAGAAAAATCAGTTTCAGCAAGTGAAGTTGGAACCGCAACAGTTTGTTCATATGTCGAGACAGTCTTCTCAATCCGCAGCTGCTCAATTTAGAC ATCAGCAAAGACTGTTGCAAATACAACAACATCAGCATCAGCAACAACAACTCTCGAAAGCAATGCCGCAGCAACCTTCTCAATTACCACAACGGTCTCC GGCTAAACCTGTGTACGAGCCTGGAATGTGTGCCAGGCATCTTACCCGGTATATGTATCAACAGCAACATAGACCTGACGACAACAATATCGAGTTCTGG AGAAAATTCGTTGCCGAGTACTTTGCTCCCAATGCAAGGAAGGAGTTGTGTGTCTCCATGTATGGAAGTGGTCGACAAACAAACGGAGTTCCCCCCCAGG ATGTATGGCATTGTGAAATTTGCAACCGCAAACCAGGCCGTGGGTTTGAGGCCACCGTTGAGGTTCTTCCCCGGCTCTACAAAATAAAATACGAAAGCGG CACTTTGGAAGAGCTTCTTTATGTTGATATGCCGCACGAATATCCAAATTCGTCAGGTCAAATTGTGTTGGATTATGCAAAAGCGATCCAAGAAAGTGTT TTTGACCAACTCCGTGTTGTCCGTGATTGTCAACTTCAAATAGTCTTCTCACCTGCATTAAAGATATGTTCTTGGGAATTTTGTACTCGGCGGCATGAAG AGCTCATCCCTAGAAGATTGCTTATACCACAGGTCAGCCAGCTCGGCGCAGCAGCTCAGAAATATCAGGCTGCTACTCAGAATACATCATCATCCAATTT GTCTGCTCAGGAGTTGCTAAATAATTGCAATGTGTTTGTTGCATCGGCCCGCCAGCTTGCGAAAGCCTTGGATGTGCTGCTGATATCGGAGGTGCTTAAC AGCATGAAAGATTTGATCGATTACAGTCGAGAAACACGGACCGGTCCTATGGAGAGTCTGACAAAGTTCCCTCAACGAGCTGTTGCTTCAACGGGATTTA ACGGTCAGGGTCAACAGTCGGAGGAGCAACAGCCACAGCAGCAACCTCCGGCTTTACCACAAAGTTCAAACAGCAACCCAAGCTCAGTCCACGGAGGGGC AACTTCGATGAACAATGCAAGTGCGCAGGCTCCTTCTCCTCCCGGCTTGTCGAGTACAGTGCCACAGCCACAACCACAACCTAATCCTTCTACTTTCCAT TCACCTACTCCTTCGTCGTCAAGTGCTCCACAAATGGCCGCTCATAACGACGTAGACCAAGGAGAACCTCAGAGTTCCGTCCAGAAACTAATTCACAACA TGTTGATGTCGACGAGCAACAACAGTAATAATGCTAAAGGTATTCTGCCAATGACCAACAATGCCATGATGAACGGAATGAGAGCCGCGATTGGTAATAA TAACAACTCGTTGATGAATGGACGTTTGGCTATGGCGTCGATGGCACGAGAGCAAACAATGAACCATCATCATCATCATCACCACCAACAGCAGGATTTG AGTAACCAATTGCTTAGTGGGTTAGGAGCTATGAATGGGTTTAATAATCTCCAGTTCTACTGGAAACCGTCTCCTTGA
AA sequence Show only first row Show all	>Lus10018933 pacid=23144710 polypeptide=Lus10018933 locus=Lus10018933.g ID=Lus10018933.BGIv1.0 annot-version=v1.0 MQQKNQFQQVKLEPQQFVHMSRQSSQSAAAQFRHQQRLLQIQQHQHQQQQLSKAMPQQPSQLPQRSPAKPVYEPGMCARHLTRYMYQQQHRPDDNNIEFW RKFVAEYFAPNARKELCVSMYGSGRQTNGVPPQDVWHCEICNRKPGRGFEATVEVLPRLYKIKYESGTLEELLYVDMPHEYPNSSGQIVLDYAKAIQESV FDQLRVVRDCQLQIVFSPALKICSWEFCTRRHEELIPRRLLIPQVSQLGAAAQKYQAATQNTSSSNLSAQELLNNCNVFVASARQLAKALDVLLISEVLN SMKDLIDYSRETRTGPMESLTKFPQRAVASTGFNGQGQQSEEQQPQQQPPALPQSSNSNPSSVHGGATSMNNASAQAPSPPGLSSTVPQPQPQPNPSTFH SPTPSSSSAPQMAAHNDVDQGEPQSSVQKLIHNMLMSTSNNSNNAKGILPMTNNAMMNGMRAAIGNNNNSLMNGRLAMASMAREQTMNHHHHHHHQQQDL SNQLLSGLGAMNGFNNLQFYWKPSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	0	1
AT3G53320			unknown protein		Lus10019909 [exp]	5.5	0.8156
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	7.5	0.7805
AT4G39860			unknown protein		Lus10041695 [exp]	9.8	0.8099
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	12.8	0.7891
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	14.1	0.7767
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	18.5	0.7602
AT3G53320			unknown protein		Lus10023170 [exp]	24.1	0.7980
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	24.5	0.7531
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	27.8	0.7517
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	28.1	0.7452

Compare expression of checked genes

Lus10018933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.