Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25800 591 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 125 / 6e-31 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 123 / 8e-31 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 118 / 1e-27 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50090 87 / 1e-18 Exonuclease family protein (.1) AT3G15080 81 / 7e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G48100 46 / 5e-05 C2H2ZnF Exonuclease family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028637 [exp] 1070 / 0 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 762 / 0 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 731 / 0 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011505 [exp] 117 / 5e-28 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019321 [exp] 117 / 8e-28 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 116 / 3e-27 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10000997 [exp] 77 / 3e-15 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019320 [exp] 73 / 1e-13 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2) Lus10011026 [exp] 71 / 2e-13 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186600 [exp] 712 / 0 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G073300 [exp] 210 / 8e-64 AT5G25800 233 / 3e-73 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 127 / 4e-31 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.001G373500 [exp] 80 / 2e-16 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 47 / 2e-05 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10018935 pacid=23144717 polypeptide=Lus10018935 locus=Lus10018935.g ID=Lus10018935.BGIv1.0 annot-version=v1.0 ATGCAGTCACCGCAGCTGGAAACTGAAGCTCCAGCTGCAGAGAAGGAGGAGTTTACCGTCGGCGAAGTAAGTAACGGCGACTCCGTCGGCAACCGATACT CCGAACCACAAGCAAAGCCAGAAATTACGTTCAATGAACCAGAAGCTGGTTTGAGTCTCACTTTGCAGGACATTCAAGGACTTGTGACTTGTGTTCTTGC TGAAGGAACCATGCCTCCTTGGGTGTGTATTAATAACAAGCCTTTGATCCCGAAAGTGGTGATGGTTTATATACCCGGCCTAGATGCAGCTTTGTACTTG TCGAAGCCTAAGTTGTTTGCTGGTTTTCGAGAACACTGCGGGAAACCAAAGGGACAGTTAGCTATTAGCTGTTTAACAGATCGCACTCAGACTATCGATG CTCTTCTAACCTGCAAGGCGAAACGGAAAAGAGATGATGACGTGGCTTCAGATCTAAATACATCAGATGCAGAGATGAGTGATTCAGCGATGGGAAGTTT GCCTTTCACTAAGCTCAAAGAGGTGCCTTTTCCTCCTAAGTATTATACACTGACTGCTCAAGAATTAGAAGACAATGGATATTGTCTTAACACACCAGGT TTTCTCTCTACCATTCCTGCTCCTGTAGGCTCTCCTGTACATGATTTCCTTGCACTTGACTGTGAAATGTGTATCACGAAAGATGGTTTCGAGCTAACAA GAATAACAGTAGTGGATGGGGGTGGAAAGGTATTGTTGGATAAATTGGTCAAACCGGAAAATCACATCGTTGATTACAACACAAGATTTAGTGGAATCAC ATTTGAAATGATGAGCAAGGTGACCACAAGTCTCAAAGACGTCCAGGAAGATTTCTTAAAACTTGTTCACCAAGAAACCATCCTCGTCGGCCATTCCCTA GAGAATGACTTGTTAGCCTTAAAGATCTCTCACAAATCGGTGATTGATACTGCCGTGTTATACAAACATCCACGAGGTGGCTCGTATAAATCCGCACTGC GAGTTCTCGCCAAGAGATATCTCCGGAGGGAGATACAACAGTCTGGTGCCGGACATGATAGTGCCGAAGATGCAAGAGCGGCCATGGAACTCGCATTGCT AAAGATAAAACGCGGACCTGATTTCGGTTCTCCTCGATCCTTTTCGCGGAAAAAGCTCCTCTCAGTACTGAGCGAGAGTAGCAAAACATCATCTATAATC GACGATATATCCATAGTAAAGCAGTATTCTTCCGAGTCCTCGCATGCATTTCCAGTGACTTCAGACGAGGAAGCCCTTCTAAAAGCACAAAAAGAGGTGA AGAAAGACCAGACGCAGTTCATCTGGACGCAATTTTCAGAGCTGGACTCCTATCTCGAAAAGCAAGCAAATGATGAAGAGAGAGTAAATGGAAAACTTGC TGAGATGATGTCACTGCTTACGTGCGAAAAGACGAAGGCTACCAACAAGAAAAGCGTTACTTGCCGGATGCCAGCTCATCTCAAGGGAGTTGTAACTCGC CTGAATCGAAGGGTACGCGATCTCTGTTCAGCTTTACCCACTAATACCATGGTCGTAATCTTCACCGGCCATGGTGACACTGCAATTGTCCGGAGAGTGA GGACGATGCTAGAAGACCAGAGCGAGACGAAGTTAGGTAGGGTGAGTATTCTAAAGGTGTTGCAAGAGCTGCAAGCTCAAGCAGAAGTTGCATTGTGCTT CATTGGCTTGAAGAAATAG
AA sequence Show only first row Show all	>Lus10018935 pacid=23144717 polypeptide=Lus10018935 locus=Lus10018935.g ID=Lus10018935.BGIv1.0 annot-version=v1.0 MQSPQLETEAPAAEKEEFTVGEVSNGDSVGNRYSEPQAKPEITFNEPEAGLSLTLQDIQGLVTCVLAEGTMPPWVCINNKPLIPKVVMVYIPGLDAALYL SKPKLFAGFREHCGKPKGQLAISCLTDRTQTIDALLTCKAKRKRDDDVASDLNTSDAEMSDSAMGSLPFTKLKEVPFPPKYYTLTAQELEDNGYCLNTPG FLSTIPAPVGSPVHDFLALDCEMCITKDGFELTRITVVDGGGKVLLDKLVKPENHIVDYNTRFSGITFEMMSKVTTSLKDVQEDFLKLVHQETILVGHSL ENDLLALKISHKSVIDTAVLYKHPRGGSYKSALRVLAKRYLRREIQQSGAGHDSAEDARAAMELALLKIKRGPDFGSPRSFSRKKLLSVLSESSKTSSII DDISIVKQYSSESSHAFPVTSDEEALLKAQKEVKKDQTQFIWTQFSELDSYLEKQANDEERVNGKLAEMMSLLTCEKTKATNKKSVTCRMPAHLKGVVTR LNRRVRDLCSALPTNTMVVIFTGHGDTAIVRRVRTMLEDQSETKLGRVSILKVLQELQAQAEVALCFIGLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	1.4	0.9062
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	2.4	0.8971
AT4G13590			Uncharacterized protein family...		Lus10011763 [exp]	4.7	0.8382
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	5.7	0.8336
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	6.2	0.8711
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	6.9	0.8457
AT5G65880			unknown protein		Lus10039652 [exp]	9.2	0.8548
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	11.0	0.8372
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	11.0	0.8411
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	13.2	0.8472

Compare expression of checked genes

Lus10018935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.