Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13560 987 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 726 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT5G25880 393 / 2e-129 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 387 / 3e-127 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 379 / 4e-124 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 374 / 2e-121 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028642 [exp] 1149 / 0 AT2G13560 1075 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10009822 [exp] 768 / 0 AT4G00570 1028 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10011772 [exp] 767 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10040930 [exp] 753 / 0 AT4G00570 1011 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10025823 [exp] 397 / 6e-130 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10043025 [exp] 391 / 4e-128 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 382 / 8e-126 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 352 / 4e-114 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 347 / 5e-112 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043700 [exp] 1050 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G135300 [exp] 1046 / 0 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 753 / 0 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 749 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.018G086700 [exp] 393 / 2e-129 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 389 / 2e-128 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 385 / 2e-126 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.003G049300 [exp] 379 / 2e-123 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 372 / 2e-120 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10018939 pacid=23144749 polypeptide=Lus10018939 locus=Lus10018939.g ID=Lus10018939.BGIv1.0 annot-version=v1.0 ATGTCGAATTTCAACTCCCAGCTCAGAGCTTCATCTTCGATCCTCAAGCGCCTCCGCCATGGATTTCCGCCTCCTGCTTCGGCCGCCACAGCTAGATCCT TCACCACCACCACCGAAGGAAATCGTCCCACCATTGTGCACAAGCGGAGTCTTGATATCCTTCACGATCCATGGTTTAACAAGGGAACTGCCTTCTCGAT GACAGAACGGAACCGGCTCGACCTTCGCGGGCTTCTTCCTCCAAATGTTATGTCTTCTCAGCAGCAGATTCAGCGATTCATGGCTGATTTGAAGCGGCTT GAAGTTCATGCGCGGGATGGACCATCGGATCCAAACGCCCTGGCCAAATGGAGGATTCTTAATCGCTTGCACGACAGAAATGAAACCATGTACTACAAGG TTCTGATTGATAAGATTGAGGAATATGCGCCCATTGTGTACACTCCAACCGTAGGACTTGTTTGCCAGAATTACAGTGGGTTGTTTAGAAGGCCGAGGGG GATGTATTTCAGTGCTGAAGACCGGGGGGAGATGATGTCCATGGTGTACAATTGGCCAGCAGAGCAGGTTGATATGATTGTTGTTACAGATGGAAGTAGG ATATTGGGCCTTGGAGATCTTGGTGTTCACGGTATTGGCATTGCCGTTGGGAAGCTCGATTTATATGTTGCTGCTGCTGGCATAAATCCCCAGAGGGTGC TCCCTGTGATGATTGATGTCGGAACTAACAATGAGAAGCTGTTGAAAGACCCTATGTATCTGGGGCTGCAAGAAAATCGTCTTGATGGGGATGAGTATGT TGATGTAATTGATGAGTTCATGCAGGCAGTTTATACTCGTTGGCCCAATGTGATTGTGCAGTTCGAGGATTTTCAAAGCAAGTGGGCTCTGAAGTTATTG CAGAGATACAGGAATTCATATAGAATGTTCAATGATGATGTCCAGGGAACAGCAGGGGTTGCAATTGCTGGTCTTCTAGGAGCAGTACGAGCACAAGGAA GACCGATGATTGACTTTCCAAAGCAAAAGATTGTGGTTGCTGGTGCTGGAAGTGCGGGGATTGGTGTCCTGAATACTGCCAGGAAAACAATGGCTAGAAT GTTGGGAAACAATGAATCTGCTTTTGAGAGTGCACGTAGTCAGTTCTGGGTTGTTGATGCTAAGGGTCTAATCACTGAGGATAGAGAAAATATTGATCCA GATGCCCAGCCATTTGCAAGGAAAGTTAATGAAGCCAATCGTCAAGGACTAGGGGAAGGTGCAAGTCTAGTGGAAGTGGTGAGACAAGTGAAGCCGGATG TGCTTCTTGGATTGTCAGCAGTTGGGGGACTGTTCTCGAAGGAGGTGTTAGAGGCCCTAAAGGGTTCAACTTCGACAAGGCCAGCCATTTTTGCTATGTC AAACCCAACAAATAATGCTGAATGCACTCCTGATGAAGCATTTTCAATTGTGGGCGACAATATTATATTTGCGAGTGGAAGTCCATTTAGAGATGTGGAT CTTGGAAGCGGTCGTATTGGGCACTCCAACCAGGGAAACAACATGTACCTCTTTCCAGGCATTGGACTGGGGACTCTACTTTCTGGCTCCAGGATCATAT CAGACGGTATGCTACAGGCGGCAGCTGAATGCCTAGCTGGATATATCACTGAAGAGGAGGTTCTAGATGGGGTCATTTACCCTTCTATCTCGAGAATACG AGATATAACAAAGGAGGTTGCTGCAGCTGTGGTAAAGGAAGCTATAAAAGAGGATTTGGCGGAAGGATATCGTGGGATGGACTCTCGGGACCTCCAAAAA CTCAATCAGGAGGAAATCGTGGAGTACGTGAAGAACAACATGTGGAATCCCGAGTACCCAACATTGGTATTTAAAGAGGACTGA
AA sequence Show only first row Show all	>Lus10018939 pacid=23144749 polypeptide=Lus10018939 locus=Lus10018939.g ID=Lus10018939.BGIv1.0 annot-version=v1.0 MSNFNSQLRASSSILKRLRHGFPPPASAATARSFTTTTEGNRPTIVHKRSLDILHDPWFNKGTAFSMTERNRLDLRGLLPPNVMSSQQQIQRFMADLKRL EVHARDGPSDPNALAKWRILNRLHDRNETMYYKVLIDKIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSR ILGLGDLGVHGIGIAVGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPMYLGLQENRLDGDEYVDVIDEFMQAVYTRWPNVIVQFEDFQSKWALKLL QRYRNSYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNTARKTMARMLGNNESAFESARSQFWVVDAKGLITEDRENIDP DAQPFARKVNEANRQGLGEGASLVEVVRQVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAIFAMSNPTNNAECTPDEAFSIVGDNIIFASGSPFRDVD LGSGRIGHSNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLAGYITEEEVLDGVIYPSISRIRDITKEVAAAVVKEAIKEDLAEGYRGMDSRDLQK LNQEEIVEYVKNNMWNPEYPTLVFKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	0	1
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	2.4	0.8180
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	2.6	0.8053
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	2.8	0.8005
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	5.1	0.7770
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	6.0	0.8080
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	7.1	0.8072
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	9.2	0.7707
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	9.4	0.7881
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	9.6	0.7148
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	10.0	0.8183

Compare expression of checked genes

Lus10018939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.