Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 161 / 7e-47 unknown protein AT4G19950 145 / 1e-40 unknown protein AT5G44860 142 / 1e-39 unknown protein AT2G18690 48 / 6e-06 unknown protein AT2G18680 41 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028643 [exp] 506 / 0 AT1G31130 228 / 1e-72 unknown protein Lus10018322 [exp] 148 / 8e-42 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 137 / 2e-37 AT4G19950 410 / 1e-144 unknown protein Lus10038358 [exp] 82 / 5e-19 AT4G19950 183 / 1e-58 unknown protein Lus10036220 [exp] 59 / 7e-10 AT5G44860 265 / 3e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186200 [exp] 310 / 2e-104 AT4G19950 185 / 3e-56 unknown protein Potri.007G105600 [exp] 271 / 2e-89 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 257 / 8e-84 AT4G19950 182 / 4e-55 unknown protein Potri.002G074200 [exp] 243 / 4e-78 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 196 / 4e-60 AT4G19950 133 / 3e-36 unknown protein Potri.015G125600 [exp] 157 / 2e-45 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 143 / 8e-40 AT5G44860 396 / 4e-139 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018940 pacid=23144718 polypeptide=Lus10018940 locus=Lus10018940.g ID=Lus10018940.BGIv1.0 annot-version=v1.0 ATGGACAGAGAGCAAGAGGAGATGCAGTTCCTAGGCATATTCGGAGTGTACAAGGAATCATACAATATCATAATCCAATGGCGCAGAATCTTCAGCCAGA TCACCCTCTCCTTGATCCTCCCTCTGGCCTTCATCTTCCTGGCTCACAAGGAGGTATCGAATCTCCTCCTCTCGAAAATCCTCCGCTCCGAAATCCAGCT CGACGAGACCCCTGTTTCGTCCGCTGGTCGTCGGTCCAGGATCTCCGGAGTGTTGACCTCCGAGTGGACCTACTTCTGGCTCCTCAAGGCCGCTTACTTC ACGTTCTTGCTGCTTTTCTCGTTGCTCTCGACGTCGGCCGTCGTCTTCTCCGTCGCCTCGCTCTACACCGGCCGCCGTGACTTGTCTTTCCGCAAGGTAA TCACGGTCGTGGTGCCTAAAGTATGGAAGCGACTAATCGTAACCTTCCTATGCTACTTCCTCTTCATCTTCGCCTACAACTTCATTGCATTCATCTTCTT CGTCGTAGTCGCGGTCGCACTGATCAACACAACGTGGGAGGCGAATGTCGCCTTCCCCGTCCTCCTCGTCCTCTATTTCATTGGATTCCTTTACTTCACC ATAACATGGCAGCTTGCTAGCGTGGTCTCGGTCTTGGAGGACTCATACGGCTTTCGTGCTATGTCGAAGAGCAGGGCCTTGCTCAAGGGGAAGACATGGC TAGCGACATTCATCTTCTTCAAGCTCAGTTTCACTTTTGGAGCCATTCAGGTCTTGTTCGATAAGCTGGTGATCCACGGGTGGAGCAACAGAGGGGCCCC AGCCAGTCGGTTCGCAGCCGGGATAGGCTCATTGCTCTTACTACTAAAGGTATTCTTGTTCGGGCTAGTGGTTCAAACGGTGTTGTACTTCGTTTGCAAG AGCTATCACCGCGAGAACATCGACAAATCGGCCTTGTCGGAGCATTTGGAAGGATACTTGGGGGATTATGTGCCGTTGAAATCGAAGGATGTTCAGATGG AGCATTATTTCAACGAGGACGAAGTTTGA
AA sequence Show only first row Show all	>Lus10018940 pacid=23144718 polypeptide=Lus10018940 locus=Lus10018940.g ID=Lus10018940.BGIv1.0 annot-version=v1.0 MDREQEEMQFLGIFGVYKESYNIIIQWRRIFSQITLSLILPLAFIFLAHKEVSNLLLSKILRSEIQLDETPVSSAGRRSRISGVLTSEWTYFWLLKAAYF TFLLLFSLLSTSAVVFSVASLYTGRRDLSFRKVITVVVPKVWKRLIVTFLCYFLFIFAYNFIAFIFFVVVAVALINTTWEANVAFPVLLVLYFIGFLYFT ITWQLASVVSVLEDSYGFRAMSKSRALLKGKTWLATFIFFKLSFTFGAIQVLFDKLVIHGWSNRGAPASRFAAGIGSLLLLLKVFLFGLVVQTVLYFVCK SYHRENIDKSALSEHLEGYLGDYVPLKSKDVQMEHYFNEDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31130			unknown protein		Lus10018940 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	2.6	0.8467
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	4.6	0.8135
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	6.6	0.7573
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	7.7	0.8146
AT1G64300			Protein kinase family protein ...		Lus10032356 [exp]	8.7	0.7793
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	9.8	0.8112
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	9.9	0.7951
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	10.2	0.8456
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	11.4	0.7789
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	12.6	0.8316

Compare expression of checked genes

Lus10018940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.