Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21410 498 / 7e-178 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 486 / 3e-173 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) AT4G15475 96 / 2e-21 F-box/RNI-like superfamily protein (.1) AT3G58530 85 / 3e-18 RNI-like superfamily protein (.1) AT5G27920 82 / 9e-17 F-box family protein (.1) AT5G01720 79 / 6e-16 RNI-like superfamily protein (.1) AT2G25490 74 / 3e-14 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 69 / 1e-12 EBF2 EIN3-binding F box protein 2 (.1) AT1G47056 68 / 2e-12 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028645 [exp] 681 / 0 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10000776 [exp] 143 / 9e-42 AT1G77000 79 / 5e-18 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Lus10012764 [exp] 101 / 5e-23 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 97 / 4e-22 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 95 / 2e-21 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 91 / 8e-20 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012294 [exp] 84 / 1e-17 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10034013 [exp] 82 / 2e-16 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012214 [exp] 81 / 2e-16 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185700 [exp] 552 / 0 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 531 / 0 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G013100 [exp] 95 / 5e-21 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 92 / 1e-20 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 86 / 4e-18 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G195800 [exp] 81 / 5e-17 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 82 / 8e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 80 / 4e-16 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 79 / 6e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 76 / 1e-14 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018942 pacid=23144672 polypeptide=Lus10018942 locus=Lus10018942.g ID=Lus10018942.BGIv1.0 annot-version=v1.0 ATGGTGAGGAGTGAAGAATTGGATCGGTGCTTTGACAAACTGATGATGGTGGATGAAAAGGGTCAGAAGATTGGAGGAGTAGACATGGCTGAGTGGAAGG ATATTCCAATGGAGATACTGTTGAGGATTTTGTCTGTTGTTGATGATCATCGGAGTATAATCATGGCTTCCGAGGTTTGTAGTGGCTGGAGGGAGGCTGT TTGCTTGGGTCTTACTCATCTCTGTCTTTCTTGGTGCAAGAACAATATGAACAACCTAGTTCTCTTTCTTGCTCCAAGGCTAAGGAACCTGCAAAGACTG TCGCTTCGTCAAGATAAACCGCAACTGGAGGACAATGCAGTGGAGATGATTGCCAGTCACTGCCATGATCTGCAAGACTTGGACCTAAGCAAAAGCTTCA AGCTAACAGATCGCTCTTTGTACGCTCTAGCTCACGGCTGCCCTAACCTTGTCAAGCTCAACATCAGCGGCTGCACAGCGTTCAGCGACGTTGGTCTCGA GTACCTTACTGGATTCTGCAGGAAGCTGAAGATTCTCAACCTTTGTGGATGTGTGAGTGCAGCTACTGATCACGCTTTGCAGGCGATAGGACGCAACTGC AGCGAATTGCAGTCGTTGAATATCGGGTGGTGCGAGGACGTTGATGACAATGGGGTGTTGAGTCTGGCATATGGATGTCCCAAACTACGAACACTCGACT TGTGTGGCTGTGTTTTGATAACAGACGATAGTGTGATTGCATTGGCGAACCGGTGTCCGCACCTGACCTCCCTCGGTCTCTACTACTGCCGAAACATAAC CGACCGAGCAATATACTCGCTGGTTCACAGCCGAGTGAAGAACAACCTTGAAACTTACAGAAGGAAAGATGAAGGGCTGAAGAGCTTGAACATCAGTCAG TGTACGGCACTCACGCCTCCAGCTGTCCAGGCATTATGCGACTCGTTCCCGGCTCTTCACACTTGTTCGGGGAGGCATTCGTTGGTGATGAGTGGCTGTT TGAACTTGACCTCGGTGCACTGTGCCTGTGCGGTTCAAGCTCACCGCCCGCTAAGTTATGTTCCTCAGCATCACGCGCATTGA
AA sequence Show only first row Show all	>Lus10018942 pacid=23144672 polypeptide=Lus10018942 locus=Lus10018942.g ID=Lus10018942.BGIv1.0 annot-version=v1.0 MVRSEELDRCFDKLMMVDEKGQKIGGVDMAEWKDIPMEILLRILSVVDDHRSIIMASEVCSGWREAVCLGLTHLCLSWCKNNMNNLVLFLAPRLRNLQRL SLRQDKPQLEDNAVEMIASHCHDLQDLDLSKSFKLTDRSLYALAHGCPNLVKLNISGCTAFSDVGLEYLTGFCRKLKILNLCGCVSAATDHALQAIGRNC SELQSLNIGWCEDVDDNGVLSLAYGCPKLRTLDLCGCVLITDDSVIALANRCPHLTSLGLYYCRNITDRAIYSLVHSRVKNNLETYRRKDEGLKSLNISQ CTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLNLTSVHCACAVQAHRPLSYVPQHHAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	1.0	0.8650
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	2.8	0.7936
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	6.0	0.7803
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	6.2	0.7962
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	7.3	0.7954
AT4G34630			unknown protein		Lus10028793 [exp]	13.2	0.7746
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	17.3	0.7515
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	19.0	0.7808
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	19.0	0.7678
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	19.0	0.7371

Compare expression of checked genes

Lus10018942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.