Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76990 677 / 0 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 451 / 1e-153 ACR4 ACT domain repeat 4 (.1.2) AT5G25320 445 / 2e-150 ACT-like superfamily protein (.1) AT3G01990 437 / 2e-148 ACR6 ACT domain repeat 6 (.1) AT2G03730 418 / 9e-141 ACR5 ACT domain repeat 5 (.1.2) AT1G12420 380 / 4e-126 ACR8 ACT domain repeat 8 (.1) AT4G22780 369 / 9e-122 ACR7 ACT domain repeat 7 (.1) AT5G65890 352 / 7e-115 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 59 / 4e-09 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G16880 42 / 0.0008 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028646 [exp] 897 / 0 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10036827 [exp] 459 / 6e-157 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 451 / 1e-153 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 449 / 8e-153 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 411 / 2e-137 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10041543 [exp] 402 / 1e-134 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 399 / 3e-133 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10019191 [exp] 267 / 2e-84 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10018952 [exp] 266 / 1e-82 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185600 [exp] 749 / 0 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 743 / 0 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.010G138600 [exp] 468 / 4e-160 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 466 / 1e-159 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 466 / 4e-159 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 445 / 3e-151 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 439 / 6e-149 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.006G256500 [exp] 431 / 1e-145 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.001G327000 [exp] 424 / 4e-143 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.007G006500 [exp] 424 / 2e-142 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01702 [flax] [poplar] TGT Queuine tRNA-ribosyltransferase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10018943 pacid=23144741 polypeptide=Lus10018943 locus=Lus10018943.g ID=Lus10018943.BGIv1.0 annot-version=v1.0 ATGGCTAAGTTTTGCTGGCCGTATTTTGATCCTGAGTATGAGACGATGAGCGCCAGAATTAACCCTCCAAGGGTATCTGTGGACAACACTACTTGTCAGG ATAGTACTCTCATAAAGGTAGACAGCATGAACAAGCCAGGGATTCTGCTGGAAGTAGTCCAAATTCTAACGGATCTTGACCTCATTATCTCCAAAGCTTA CATTTCTTCCGATGGTGGATGGTTCATGGATGTATTTCATGTTACTGACCAGCAAGGGAACAAGATTACCGATACCAGGACCATCGATTACATCGAAAAG GTGCTAGGACCGAAAAGTGGAGTAGCCAAAGAAGAAGGGACAGCCTGGCCCGTAAAACGAGTCGGGGTGCACTCAATCGGCGATCACACAGCCATTGAAC TCATAGGCAGGGATCGTCCGGGCCTTTTATCTGAGATCTCAGCCATTCTTGCCAATCTTCACTTCAACGTGGCAGCTGCAGAAGTATGGACACATAACAG GAGGATAGCATGTGTTTTATATGTCAACGACGACACAACTTCTCGTGCTGTGGATGACCCCACCAGGCTATCAGCCATGGAAGAGCAGCTCAAGAATATC TTGCGTGGATGTGAGGATGATGAGGATAGAGCTGGTCGAACCAGCTTTGCAATGGGGTTTACGCATACTGACCGTAGGCTGCACCAGATGTTGTTTGCTG ATAGGGATTATGAAGGCAGTGAAGTCGAAAAGCCTGCATCTTTCAAGCCACAGGTGACGATTGAACGTTGTGAGGAGAAAGGGTACTCAGTTGTCAGTGT TCGGAGCAAAGATCGTGCGAAGTTACTGTATGATGTCGTTTGTACTCTCACTGATATGCAGTATGTTGTTTTCCACGCGACTATATCATCTGATGGCCCT TACGCTTCGCAGGAGTATTTCATCCGTCACATGGATGGTTGCACTCTGGACACTGAAGGAGAGAAGGAACGAGTCGTCAAATGTCTCGAAGCTGCAATCC GAAGAAGAGTATGTGAGGGTGTGAGCCTGGAGCTTAGTGCCAAAGACAGAGTGGGACTGCTATCAGAAGTGACAAGGGTACTAAGAGAGAACGGCCTATC GGTATCTCGAGCAGGGGTGTCAACAATAGGAGAGCAGGCTATGAATGTGTTCTACGTTAGAGATGCTTCGGGTAACCCGGTCGACATGAAGACCATCGAA GCTCTACGCAAGGAGATCGGCCAAAGGATGATGCTTAATGTCAAGAAATGTCCTGTTTCTGCTGCTACAGTTGGTAGAAAGGAACAGCAAGAAGCCAACA AAGGATGGGCCAAAACAAGCTTCTTCTTTGGTTACTGGATAGGAGGATTTGGTTTTGGAGAGAGCATGGATGATCGCCCTGCTTTGCTTAAGACAGTGAC TAAGAAAGACCTCGTCTCGTCTCTGTGGCTTGGTCTACCAGAGGAGGTGCTGCAAGGTGTTGCTGCGGGAATTGATCTTTTCGACTCATCGTATATATAC CACCTACCACTTGGAGGCTTTGCACTGACCTTCCCTTTAGACGTCCTTGGATTAGCTGAAGAATTTCCGGCGAAAAGTATCGAAACCAACTCGAGCAAGA TCAATCTTAAAGCAACCGTGTACAGGTACTCGATTCTACCACGAATGACGGAACCTTACAATAGAATCGCGACAGTTCATCAGTTGGATCTTCCTTTTCT TTCTCCAGGAAAGACGTTAACCGCTATTGTCGAAGGATGTCTATGCTACACATGCCAGAATCACACCAGAGCTTACATCAACCACCTCCTTCACGTCCAT GAAATACACAGCACACACCACTACCTGGGGTTTTTCAAATCGATCAGGGATTCGATCAAGGACGACAAGTTCGAGCAGTTCTGTCAGATATTCCTCCTGA GCCGCCGCGATCATCTCGCTTCCCCACCGTCAGCGCATATACCACCTTTTGCTAGTGATTTTCCATTGTCTACATAG
AA sequence Show only first row Show all	>Lus10018943 pacid=23144741 polypeptide=Lus10018943 locus=Lus10018943.g ID=Lus10018943.BGIv1.0 annot-version=v1.0 MAKFCWPYFDPEYETMSARINPPRVSVDNTTCQDSTLIKVDSMNKPGILLEVVQILTDLDLIISKAYISSDGGWFMDVFHVTDQQGNKITDTRTIDYIEK VLGPKSGVAKEEGTAWPVKRVGVHSIGDHTAIELIGRDRPGLLSEISAILANLHFNVAAAEVWTHNRRIACVLYVNDDTTSRAVDDPTRLSAMEEQLKNI LRGCEDDEDRAGRTSFAMGFTHTDRRLHQMLFADRDYEGSEVEKPASFKPQVTIERCEEKGYSVVSVRSKDRAKLLYDVVCTLTDMQYVVFHATISSDGP YASQEYFIRHMDGCTLDTEGEKERVVKCLEAAIRRRVCEGVSLELSAKDRVGLLSEVTRVLRENGLSVSRAGVSTIGEQAMNVFYVRDASGNPVDMKTIE ALRKEIGQRMMLNVKKCPVSAATVGRKEQQEANKGWAKTSFFFGYWIGGFGFGESMDDRPALLKTVTKKDLVSSLWLGLPEEVLQGVAAGIDLFDSSYIY HLPLGGFALTFPLDVLGLAEEFPAKSIETNSSKINLKATVYRYSILPRMTEPYNRIATVHQLDLPFLSPGKTLTAIVEGCLCYTCQNHTRAYINHLLHVH EIHSTHHYLGFFKSIRDSIKDDKFEQFCQIFLLSRRDHLASPPSAHIPPFASDFPLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10018943 [exp]	0	1
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	3.7	0.6981
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	11.5	0.6682
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	12.0	0.6624
AT3G54000			unknown protein		Lus10016465 [exp]	16.5	0.6699
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	20.8	0.6039
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	21.4	0.6741
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10034215 [exp]	44.3	0.6173
AT3G26590			MATE efflux family protein (.1...		Lus10006205 [exp]	45.1	0.6316
AT3G12320			unknown protein		Lus10024129 [exp]	101.2	0.5703
AT3G54500			unknown protein		Lus10024170 [exp]	112.0	0.5370

Compare expression of checked genes

Lus10018943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.