Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 333 / 6e-106 Protein kinase superfamily protein (.1) AT3G13690 333 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 330 / 1e-104 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G38560 244 / 2e-72 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G26940 236 / 2e-71 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G23540 241 / 8e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24540 236 / 1e-70 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 239 / 4e-70 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G26150 238 / 2e-69 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 236 / 2e-69 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000773 [exp] 371 / 4e-125 AT5G56790 74 / 2e-14 Protein kinase superfamily protein (.1) Lus10006148 [exp] 342 / 9e-109 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 338 / 2e-106 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024111 [exp] 311 / 4e-97 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10008566 [exp] 302 / 3e-94 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 271 / 3e-81 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10041608 [exp] 268 / 2e-80 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 268 / 1e-79 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 266 / 3e-79 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185500 [exp] 732 / 0 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G034900 [exp] 338 / 3e-107 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 337 / 6e-107 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 323 / 3e-102 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G035900 [exp] 300 / 1e-93 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 269 / 5e-82 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 270 / 1e-81 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.002G130300 [exp] 256 / 2e-76 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 249 / 1e-73 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G053301 [exp] 243 / 1e-72 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018944 pacid=23144676 polypeptide=Lus10018944 locus=Lus10018944.g ID=Lus10018944.BGIv1.0 annot-version=v1.0 ATGGAGGGCGGCTCTCATTCGCCGGCGGCGTCGGTGGTGGTGATTGCGTTTGATGCTACCAAGGAAAGGAGTGTTAAGGAGCTTAAGGCCACCATTGATG GTGTCAGGAGTAAAAGTGGCATTCTTTCCCCTGGCGATCGGCTTGTTTTTCTTGGTGTTCTGGATAAAGTGCCGCATCCTATGGGTTATCAAGTGAAAGC TTGCCCTGATTCATTTGCTGGAGCAAGCATTCGTGTGATGGAAGATGAGGTTATCAAGAAGGTTGATATATACGTGACCAAGCTCTCGAAGAGTGCTGCA GCCTGCGTCGACGAAAGGGTTTGTGTTGAAGTTACAATGGCTGCCGGAACTCCACCAAAGCAGGTTGTATTGCAAGAAGTTGCAACCTCTAATGCAGCAT GGCTCGTACTAGACAGGCACCTTAAAAGGGATTTGAAGTTTTACCTTACTCAGATTCCTTGCAAAGTCGCATTAATTCAAGATGACTTGTCTGTGGAAGT TGAGAGAGATCATACGAGGAATGTCTCGGATGCTACAGAACACAAAACATTTTATGCCACGTCCAGACATGTTCCAATCTTGGATTATCAGGGCCATAGA AACAGTAGGCAGTCTGTTGTGTCTTGCTCAAGTTACCCGTTATCTTGTGATTCAAGTAACGACGCCAAGTGGGCAATGGACCGCAATAACTCTCCAGCTA TTGGCGCATCTGCTAATCGCGGTGGATCAGAAGTTGAGTACCATGTCGAGAGTCAAATTATACGAAGGCAAATTAGCGATATCTTCAGACAGAGGACCTC AGAAGAACCTATTCTTTGCTCCATTTGTGGCATCAGAACTGATCTAAATGTCAAGGATTCAATGAGATTCAGCATTTCTGAGATTCAGCTTGCAACAGAC AACTTTTCAAATGTCAACTTATTAGGAGAAGGTGGATATGGTCATGTCTATAAGGGTAGGCTACACGGTGGACAATTCATTGCGGCGAAGGTGCATAAAG AAGAAAGTACTCAAGGATTTTCGGAATTTCAGTCCGAGATTCAAGTCTTGAATTTTGCCCGGCACAAGAATATCGTGATGCTTTTGGGATTCTGCTGCAA GGAGAACGTTAACATTCTTGTCTACGAGTATATTTGCAACAAGTCATTACATTCGCATTTATTCGATAAAACAGAAAATACTCTCCAATGGCATCAGAGA CAAGCTATTGCCATTGGAATTGGCAAGGGTTTGCGTTTTCTGCACGAAGAATGTCGAGGCAGCCCAATTGTACATCGAGATTTGCGCCCAAGCAATGTGT TACTCACACATGATTTCGTTCCAATGGTTGGAGATTTCGGTCTTGCAAGATGGAAAACTATTGATCCTGTGCACACTAGGCTACTTGGCACATTAGGATA TCTGGCACCCGAGTACGTCGAAAGTGGTTGTATCTCCGTGAGGACGGATGTGTATGCATTTGGTGTTATCCTGTTGCAACTAATATCAGGACGCAGAGTA ATCGATGCCAAGCAGCTAGAAGGACAACAATCTATTAGAGAATGGGCCATACCATTGATTGAAGAGCTTGCTTTACACAAGCTAATCGATCCTCGACTGG GAGAGTCATATGATACATATGAGCTCTACCAAATGGCTAAAGCAGCTTATCTCTGCGTACAAAGGAACCCTGAAAATCGACCTTCAGCCGGACAGGTAAC CGAGTATCTATACTAG
AA sequence Show only first row Show all	>Lus10018944 pacid=23144676 polypeptide=Lus10018944 locus=Lus10018944.g ID=Lus10018944.BGIv1.0 annot-version=v1.0 MEGGSHSPAASVVVIAFDATKERSVKELKATIDGVRSKSGILSPGDRLVFLGVLDKVPHPMGYQVKACPDSFAGASIRVMEDEVIKKVDIYVTKLSKSAA ACVDERVCVEVTMAAGTPPKQVVLQEVATSNAAWLVLDRHLKRDLKFYLTQIPCKVALIQDDLSVEVERDHTRNVSDATEHKTFYATSRHVPILDYQGHR NSRQSVVSCSSYPLSCDSSNDAKWAMDRNNSPAIGASANRGGSEVEYHVESQIIRRQISDIFRQRTSEEPILCSICGIRTDLNVKDSMRFSISEIQLATD NFSNVNLLGEGGYGHVYKGRLHGGQFIAAKVHKEESTQGFSEFQSEIQVLNFARHKNIVMLLGFCCKENVNILVYEYICNKSLHSHLFDKTENTLQWHQR QAIAIGIGKGLRFLHEECRGSPIVHRDLRPSNVLLTHDFVPMVGDFGLARWKTIDPVHTRLLGTLGYLAPEYVESGCISVRTDVYAFGVILLQLISGRRV IDAKQLEGQQSIREWAIPLIEELALHKLIDPRLGESYDTYELYQMAKAAYLCVQRNPENRPSAGQVTEYLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	0	1
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	1.7	0.8856
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	4.9	0.8824
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	6.3	0.8498
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	6.9	0.8169
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	13.0	0.8233
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	15.2	0.8154
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	15.9	0.8279
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	16.1	0.8547
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	17.8	0.8538
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	20.3	0.8460

Compare expression of checked genes

Lus10018944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.