Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21400 646 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 622 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G43980 550 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 359 / 6e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G34780 318 / 5e-99 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT3G53360 297 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 286 / 1e-82 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G49710 285 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 288 / 2e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 284 / 4e-81 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028647 [exp] 938 / 0 AT1G43980 459 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028648 [exp] 889 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 602 / 0 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 526 / 8e-178 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10000772 [exp] 496 / 2e-167 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10015898 [exp] 338 / 1e-101 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 328 / 1e-98 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020081 [exp] 309 / 4e-91 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 298 / 2e-86 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185300 [exp] 738 / 0 AT1G43980 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G185400 [exp] 642 / 0 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 616 / 0 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.005G064000 [exp] 606 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.007G104700 [exp] 324 / 7e-97 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 321 / 3e-95 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 314 / 3e-93 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 305 / 4e-90 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 309 / 2e-89 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 302 / 1e-87 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018945 pacid=23144753 polypeptide=Lus10018945 locus=Lus10018945.g ID=Lus10018945.BGIv1.0 annot-version=v1.0 ATGGGAATCTGGGTTGCCAGGAAATCCGGAGCCGCCGCCATGTCGGCGGCGACGGCGGCGAGTCATCACCTGAGGAGAATGGTTAACAGTGGTTCTTATT CTACTTCTTTGATTGCTGGGGAGAGCTATGTGAAGAAGGGTTCGTATTTAGGTGGTTTGTGGAGAAGATTCAAGTCCTCGAAATCATCGGCCGCCGTTGA TCAGCTTCATCAGGCGTATTCAAGCGACGATGAGGCTAACGGTAACGTTCAGGTACTGGAGTTTCCAGGAGGACAGGTAACGTACATTTCGGAAATGAAG TTCATTTCGGAGTCGAACGACAAGAGGGTACCTTGCTACAGAGTTTTGGATGACAATGGTGCCCTAATCCGAGGAAGTGAATTTGAAGAGGTGAGCCAGG GAGTTGCTGTGAAGATGTACAGAGAAATGGTGAAGCTTCAGGTAATGGATACCATCTTCTACGAGGCGCAAAGACAAGGGAGGATATCCTTTTACCTTAC TTCGTCCGGTGAGGAAGCCATCAGCGTTGCTTCGGCCGCTGCATTAACCTCTGACGATGTCATCCTCCCCCAGTACCGAGAGCCAGGAGTTCTGTTATGG CGAGGCTTCACGCTTCAGGAATTCGCCAACCAATGTTTCGGGAACAAGGACGACTACGGGAAAGGGCGACAAATGCCAATTCATTATGGATCCAACAAGC TCAATTACTTCACCGTTTCGTCCCCTATAGCCACCCAAATCCCACAGGCAGCTGGAGTAGCATACGCTCTCAAGATGGAAAAGAAGGACGCTTGTGTAGC CACATTTTTCGGCGATGGTAGCACCAGCGAGGGAGATTTTCATGCTGGTTTGAACTTCGCGGCGGTCATGGAGTCCCCTGTTATATTCGTCTGTAGGAAC AATGGATGGGCCATCAGTACCAAAGTGTCCGAACAGTTTCGAAGTGATGGGATTGTGGTCAAAGGACAAGGTTATGGGATAAGAAGCATTAGGGTTGATG GTAATGATGCTCTTGCTGTTTATTCAGCCATCCATTCCGCTCGTCACTTTGCGGTCACCGAAGGAAAACCTGTACTTGTCGAGTTTCTAACATACCGGGT AGGCCACCACTCTACCTCGGACGACTCGACCAAGTACCGGCCACTAGACGAGATCGAGTACTGGAAAGTAGCTAGGAACCCGGTGAACAGATTCCGGAAA TGGGTAGAAACCAACGGATGGTGGAGTGACCACGAAGAATCCGAGCTCAGAGCCACAACCAGGAAACAGCTCTTGCATGCAATTCAGGCGGCGGAGAAGA CCAAGAAGCCTTCGGTGGAAGAAATGTTCGCCGACGTTTATGATCGGTCACCATTGAATCTCCGCCAGCAAGAAGAACAACTCAGAGAAACCATTAAGAA ATACCCTGGAGATTACCCTACTGATCCGGCGCCGTTGCTTGGTCAAGCCATCGCCGTTCTTCCGCCCATGTTCTTCTACTCCGTCATCCACCATTCCCCT TCGAAGCTCTATTCTTCTTCTCCAGGATTCATTATTTGTATGTACCCTCTGGTAAAGCCCAACCATAGTAGGATCCTCAAACCTTCTCTCGCCAACTGCA TTAATCTCATCGACCAGTGTTTCTTACTGAAATCCTTGAAGAACGGTACAGCGCTTCATGCTCAGTTAATCAAGGTCGGGTTCAATCGCTACACTTTTAT TGGTAACCGTTGTGTGGATCTATACTGCCGGTTCGGTTCGTCTGCATCCGACGCTGTAAAAGTGTTCGACGACATTGCTTTCAAGAATGTCATATCTTGG AACATATGTCTGAAGGGGCTGGTGAATTTCCGTCATGTGGAAGAAGTGTGTGATTTTTTTGATGAAATGCCTGAAAGAGATGTTGTTAGTTGGAATTCAG TGATTGCGGGGCATGCTTCGTGTGGCCGTGTCGACCAGGCTTTGGAAAAGTTCAGGCAGATGCACGTTTGGGGTATACAACCAAGTGAGTACACTTACTC AATCTTGATGTCGGTTGTGTCTATTGCAAATCATGTTAAGGAGCTTCATGGAAGCTCGATTCGATGTCGATTAAGTACTTCAAATGTGGTTGTTGGAAAT TCACTGATCGACTTGTACGGGAACCTCGGCCTGCTAGATTATTCTTTACGTGTGTTCTTAAGCATGAAAGAGACGGATGTTATATCTTGGAACTCGGTTA TCACATGCCTCTGTAAATCTGGATGTGGAGAATTAGCCCTAAATTGGTTCTGCTTGATGAGATCTTCAGGGTGTTCGATTGATGCATTTACCTTATCTGC GGTAATTAACTGCTGTTCTGATTTGTGGAATTTGAACAAGGGTAAGCAGATTCTAGCACTTTGCATGAAGTTGGGATTTGTACGTAACTCTCTCGTTTCA AGTGCAGCTATTCACATGTTTTCGAAATGCAACAGATTCGCGGATTCAGTTAAGCTCTTTGAAGAGCTACAGTTCCGGGATTCTGCAGTTTTCAGCACGA TCATTTCGTGCTACACGTACCACCATTATACTGAAGAGGCTCTTCGACTATTTGTGCTTACCTTGAAGGAAGATGTAAGGCCAACGGAATACACATTCAG CAGTATACTAAGCAGCATCTACAGCTTCCCAGTAGAGCAAGGAACTCAAATCCACTCCTTAGTTCTCAAATCGGGATTCGAGTCGGATGCTATCGTTGCT AGCTCATTAGTGGATATGTACTCCAAATACGGATTGGTTGACTATGCCATGGATATATTTAAAAGAATGACTACCAGAGATTTGACATGTTGGAATACCT TGATCATGGGGTTAACTCACAACAGTAAGTTTCATGAAGCCCTGTGCAGTTTCGAAGAACTACTAAGGATTGGTCCTGGTCCTGATAGGATCACTTTCTT CGCGGTTCTCTTAGCGTGTGCTAACGGAGGGTTTATCAACGAGGGAATGTCAATCTTCTCCTCGATGATGGATGATTACGGAATCATACCCGGGGATGAA CACTTTGCTTGCTTGGTGAACATATTGTGTGAAGCTGGTAGGGTTGATCAGGCAGTGGAGGTTATAAAAGGAATGCCATTTGAACCGGGTTCGTTAGTTT GGGAGTCGTTACTATATGCTTGTTGTTCAAGTGGCGACTTGAATCTTTCGGAGGGACTTGCAGCGAGACTCATGGGCATCATCCAAGAGCCAACTGTGCC GTATCTGGTCTTGGCTCGAATATATGAGATGCAGGGAAGATGGGAGTCGCTGCTCCGTCTCAAGAACATAATGAAATCCAGGGTGAAGGTGAAGCAGGTG GTTGGATTTAGTTGGATTGGTATCAGCAGCCAAGTTCACGTTTTTGACGGTAACCAGTTACAACAACACGGCAGTAAAGATATTTATTCTTCTCTGAGAC TACTGACATGGGAGATGGATGATGAAGGCGTATGA
AA sequence Show only first row Show all	>Lus10018945 pacid=23144753 polypeptide=Lus10018945 locus=Lus10018945.g ID=Lus10018945.BGIv1.0 annot-version=v1.0 MGIWVARKSGAAAMSAATAASHHLRRMVNSGSYSTSLIAGESYVKKGSYLGGLWRRFKSSKSSAAVDQLHQAYSSDDEANGNVQVLEFPGGQVTYISEMK FISESNDKRVPCYRVLDDNGALIRGSEFEEVSQGVAVKMYREMVKLQVMDTIFYEAQRQGRISFYLTSSGEEAISVASAAALTSDDVILPQYREPGVLLW RGFTLQEFANQCFGNKDDYGKGRQMPIHYGSNKLNYFTVSSPIATQIPQAAGVAYALKMEKKDACVATFFGDGSTSEGDFHAGLNFAAVMESPVIFVCRN NGWAISTKVSEQFRSDGIVVKGQGYGIRSIRVDGNDALAVYSAIHSARHFAVTEGKPVLVEFLTYRVGHHSTSDDSTKYRPLDEIEYWKVARNPVNRFRK WVETNGWWSDHEESELRATTRKQLLHAIQAAEKTKKPSVEEMFADVYDRSPLNLRQQEEQLRETIKKYPGDYPTDPAPLLGQAIAVLPPMFFYSVIHHSP SKLYSSSPGFIICMYPLVKPNHSRILKPSLANCINLIDQCFLLKSLKNGTALHAQLIKVGFNRYTFIGNRCVDLYCRFGSSASDAVKVFDDIAFKNVISW NICLKGLVNFRHVEEVCDFFDEMPERDVVSWNSVIAGHASCGRVDQALEKFRQMHVWGIQPSEYTYSILMSVVSIANHVKELHGSSIRCRLSTSNVVVGN SLIDLYGNLGLLDYSLRVFLSMKETDVISWNSVITCLCKSGCGELALNWFCLMRSSGCSIDAFTLSAVINCCSDLWNLNKGKQILALCMKLGFVRNSLVS SAAIHMFSKCNRFADSVKLFEELQFRDSAVFSTIISCYTYHHYTEEALRLFVLTLKEDVRPTEYTFSSILSSIYSFPVEQGTQIHSLVLKSGFESDAIVA SSLVDMYSKYGLVDYAMDIFKRMTTRDLTCWNTLIMGLTHNSKFHEALCSFEELLRIGPGPDRITFFAVLLACANGGFINEGMSIFSSMMDDYGIIPGDE HFACLVNILCEAGRVDQAVEVIKGMPFEPGSLVWESLLYACCSSGDLNLSEGLAARLMGIIQEPTVPYLVLARIYEMQGRWESLLRLKNIMKSRVKVKQV VGFSWIGISSQVHVFDGNQLQQHGSKDIYSSLRLLTWEMDDEGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	0	1
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	3.0	0.9331
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	5.8	0.9446
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	7.5	0.9443
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	7.5	0.9471
AT3G53630			unknown protein		Lus10025312 [exp]	8.9	0.9284
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	10.5	0.8784
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	13.0	0.9396
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	14.5	0.9059
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	15.2	0.9215
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	15.4	0.9411

Compare expression of checked genes

Lus10018945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.