Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09730 155 / 4e-42 RH39 RH39 (.1) AT3G02065 89 / 3e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06980 81 / 1e-16 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 76 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34910 73 / 6e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G18600 71 / 3e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 71 / 3e-13 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 71 / 5e-13 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 69 / 2e-12 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 69 / 2e-12 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017781 [exp] 156 / 2e-42 AT4G09730 732 / 0.0 RH39 (.1) Lus10039091 [exp] 78 / 2e-15 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10038771 [exp] 76 / 1e-14 AT3G06980 645 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 75 / 1e-14 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 75 / 2e-14 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020088 [exp] 75 / 2e-14 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10008989 [exp] 74 / 2e-14 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 74 / 5e-14 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 73 / 7e-14 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198300 [exp] 164 / 4e-45 AT4G09730 743 / 0.0 RH39 (.1) Potri.014G140100 [exp] 80 / 4e-16 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.009G045300 [exp] 79 / 5e-16 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G004700 [exp] 79 / 6e-16 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 75 / 2e-14 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G193800 [exp] 72 / 1e-13 AT1G59990 631 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 72 / 2e-13 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 71 / 4e-13 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 69 / 9e-13 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.019G059100 [exp] 69 / 1e-12 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10018946 pacid=23144724 polypeptide=Lus10018946 locus=Lus10018946.g ID=Lus10018946.BGIv1.0 annot-version=v1.0 ATGCGAAGAGCTAGCGTCACGTTCTTCCGAAAACTCGCCGTCGCCGGAGTCGCCGAATCAAAACCGCGAACTGAATACCTCCCTCGAGTCAGGCCTTTCT CAAGCGTCCATGAGAAGCCTAAAACAGTTCTGGAGAAGCCCAAGAAGGAGTCGCAGGTCCTCGAGAAGTTCCGGCAGAGGAAGCTCCAAGGCTCTCAAAT GAAGTCGTCATCGCAGAAAATTAGCTCCGACGATTCAACTCGCGATCGGAAAAGTGAAGCTGCTGCGAAAGCAGCAGCGGCGGACGTGGTGACTTCGAGC TTTGTCGAGCTAGGTTTAAAAGAGGAGTTCATATCGGCCGCCGAGGAGATGGGGGTACGATTTCCCGACGAGATTCAGTGCGTCGGAATCCCAGCTATCT TGGAAGGGAAGAGCGTTCTTCTGAGCTGCGAAGACGGCGACGGCGGTGGGAGAACTCTCGCTTACTTGTTGCCGCTGATTCAGCTACTAAGGCAGAACGA GACGGCCATCCCTAATTCGAAAAAGCACCCTAAAGCGGTTGTTCTTTGCCCTACTGAAGATGTAGCAGATGAGGTATTTCGTGGGGCGAAATTCATCTGT GATTTGGTGACACGAGCAAAACCAGAAGTTGCAGAGGTCTCAATCGGGTTGCTGGTAGGAACTCCTGAAGAGATTCTGCAGCAAATGGAGGATGGAACTA TTGTGGTCGACGATATCAAACACCTGGTGTTGGACGAAGTAGATACAATGCTTCAACTAGGGTACGGTACTCACATCAGCAAGATCGTTCGCTGGTTGAG GAACTCGAAATCGGGGATCCAGACCATCTTAGCTTCTTCGCCGATCACCAATATGCTTTCCGAAGATTACTCATTGATGAACCGGATTGAGCTCGAAAAC TCGGGTCAAGTTGCAGCTGTGTTGCTGGAGATGGATCGAGAAGAGGCGTTTGATGCAGTGGAGTCGTTAGGTGCTTTAAAGAGGAAAGTAGCTGAAGCCA TGGATTCCTTCTCATCAGAAGAAGCAAGCAAACCCTTAAGTTCGAGATGTTGA
AA sequence Show only first row Show all	>Lus10018946 pacid=23144724 polypeptide=Lus10018946 locus=Lus10018946.g ID=Lus10018946.BGIv1.0 annot-version=v1.0 MRRASVTFFRKLAVAGVAESKPRTEYLPRVRPFSSVHEKPKTVLEKPKKESQVLEKFRQRKLQGSQMKSSSQKISSDDSTRDRKSEAAAKAAAADVVTSS FVELGLKEEFISAAEEMGVRFPDEIQCVGIPAILEGKSVLLSCEDGDGGGRTLAYLLPLIQLLRQNETAIPNSKKHPKAVVLCPTEDVADEVFRGAKFIC DLVTRAKPEVAEVSIGLLVGTPEEILQQMEDGTIVVDDIKHLVLDEVDTMLQLGYGTHISKIVRWLRNSKSGIQTILASSPITNMLSEDYSLMNRIELEN SGQVAAVLLEMDREEAFDAVESLGALKRKVAEAMDSFSSEEASKPLSSRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09730		RH39	RH39 (.1)		Lus10018946 [exp]	0	1
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	2.4	0.9451
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	6.5	0.9294
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	6.6	0.9189
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	8.4	0.9185
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	14.3	0.9184
AT1G29640			Protein of unknown function, D...		Lus10002781 [exp]	16.1	0.9123
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	20.0	0.9195
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	20.1	0.9066
AT3G52905			Polynucleotidyl transferase, r...		Lus10008532 [exp]	24.1	0.8719
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	25.7	0.9170

Compare expression of checked genes

Lus10018946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.