Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21390 64 / 8e-12 EMB2170 embryo defective 2170 (.1) AT1G76980 58 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000771 [exp] 225 / 2e-73 AT1G21390 66 / 1e-12 embryo defective 2170 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185200 [exp] 59 / 8e-10 AT1G76980 134 / 1e-37 unknown protein Potri.002G075400 [exp] 56 / 5e-09 AT1G76980 141 / 2e-40 unknown protein Potri.005G064700 [exp] 50 / 5e-07 AT1G76980 70 / 7e-14 unknown protein Potri.007G104500 [exp] 47 / 5e-06 AT1G76980 70 / 6e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018947 pacid=23144650 polypeptide=Lus10018947 locus=Lus10018947.g ID=Lus10018947.BGIv1.0 annot-version=v1.0 ATGAACTTCCCCGAAATGTACGGAGAATACGGCGGAGGGCCGGCGGAGGAAGTCATTCTGGTAATCGACGACGACGACGAAGAATGCTTCACCACCGCAG CTTCCACCCCACCTCCACGGTGGATTGGCCGGACAACGGCGGGGTTGGTGGAGGAGGATGATGGTGTAGCCGATGACTGGTGTCTTTCCCCTGCCTCCAG AGCTCTAGAGATAGCCAGAGGGCAGAGAGAGCTGATGGATATGATCAGAACAATGCCGGAGGATTTCTACGAGCTCTCCCTCAAGGATTTGGTGGATCAC CACGCTCAAATCTATAGCGAATCGGACCCGGATCGGGTCGAGGAGCGATTACCACCGGAGAGAAATTCGAGCGGCCAAGGAGGAGAAGCTAGTCAACAAC CGACGGCGGCGACGGCGGCGCCGGCGAAGATGAAAAGAAGTGGGAGCGTGAACTACGGATCAGGGTTTCTGCTGAGACTTCCGATTAGTTACTTGAGGTC GAGGAACAAGAAGAAGAAGATGGTCAAGAAGAAGAAGAAGGAGGGCGCCGTCGTTGATGGCGGCGGTGGAAGAGTTTCCCCGAAGCCGGCAAAGGAGGCA GGGGAGAGTGAACGAAGTAGTTCGGCGTTCAGCGGAGGAGGAAGTAGAAGCAGTGAAAGTAGAAGCTCAAAGGGTAGTACTAGCCGTGGAAGCTGGAGAA GCAGTAGCAGAAATAATAGCATCAGGAGAAAGAGTGGAGGTCGTTGGTGTCTATTCTTTTCATCAAGCAAAGGCAAAGTGATAGAGTAA
AA sequence Show only first row Show all	>Lus10018947 pacid=23144650 polypeptide=Lus10018947 locus=Lus10018947.g ID=Lus10018947.BGIv1.0 annot-version=v1.0 MNFPEMYGEYGGGPAEEVILVIDDDDEECFTTAASTPPPRWIGRTTAGLVEEDDGVADDWCLSPASRALEIARGQRELMDMIRTMPEDFYELSLKDLVDH HAQIYSESDPDRVEERLPPERNSSGQGGEASQQPTAATAAPAKMKRSGSVNYGSGFLLRLPISYLRSRNKKKKMVKKKKKEGAVVDGGGGRVSPKPAKEA GESERSSSAFSGGGSRSSESRSSKGSTSRGSWRSSSRNNSIRRKSGGRWCLFFSSSKGKVIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10018947 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	1.4	0.9413
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	7.3	0.9089
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	9.6	0.9238
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10010113 [exp]	10.0	0.9007
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	12.4	0.9233
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	18.0	0.9195
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	18.7	0.8912
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	19.9	0.9225
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	20.2	0.9029
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	22.6	0.9183

Compare expression of checked genes

Lus10018947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.