Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21380 412 / 8e-141 Target of Myb protein 1 (.1) AT1G76970 380 / 2e-129 Target of Myb protein 1 (.1) AT4G32760 295 / 2e-93 ENTH/VHS/GAT family protein (.1.2) AT3G08790 270 / 1e-84 ENTH/VHS/GAT family protein (.1) AT2G38410 223 / 3e-66 ENTH/VHS/GAT family protein (.1) AT5G01760 193 / 6e-56 ENTH/VHS/GAT family protein (.1) AT5G63640 190 / 1e-55 ENTH/VHS/GAT family protein (.1) AT5G16880 113 / 1e-27 Target of Myb protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028649 [exp] 640 / 0 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10042770 [exp] 446 / 4e-154 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10029739 [exp] 446 / 6e-154 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10022140 [exp] 321 / 5e-103 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10022753 [exp] 253 / 1e-77 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 251 / 8e-77 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 248 / 2e-75 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10011689 [exp] 200 / 2e-57 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 182 / 2e-52 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184900 [exp] 450 / 1e-155 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 447 / 2e-154 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 320 / 5e-103 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 320 / 8e-103 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.016G131900 [exp] 268 / 1e-82 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 260 / 4e-80 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 192 / 1e-56 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 192 / 1e-56 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 177 / 5e-51 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 119 / 1e-29 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10018948 pacid=23144731 polypeptide=Lus10018948 locus=Lus10018948.g ID=Lus10018948.BGIv1.0 annot-version=v1.0 ATGGCTAACAATGCGGCAGCTTGTGCGGAGAGGGCGACAAGTGATATGTTGATTGGTCCCGATTGGGCTATTAACATTGAGCTTTGTGATATCATCAACT TGGATCCTAGGCAAGCAAAAGACGCATTGAAAGTACTGAAGAAGCGGCTAGGGAACAAGAATTCGAAGACACAACTCCTAGCTCTGTATGCATTGGAGAC TGTCAGCAAAAATTGTGGAGAGAATGTGTTTCAGCAGATTGTTGAGCGTGATATCTTGCGCGATATGGTTAAAATCGTGAAGAAGAAGCCGGATCTGACT GTCAGAGAAAAGATACTTAGCCTTATAGGCACGTGGCAGGAGGCATTCGGCGGGCCAGGGGGGAGGTACCCTCAGTATTATGCTGCTTATAACGAACTCA GGGCTGCTGGATTCGAATTCCCACTCAGGGAAGATAGCGGTGTGGCAATATTCACTCCTCCTCAAACACAGCCAATAGCGCATGAACCAACGTACGAAGA TGCTGCAATCCAGGCATCTCTCGAGTCTGATGCTTCCGGCCTCAGCTTATTGGAGATTGAAAATGCGCGTGGTCTAGCAGAGGTGCTAATGGAAATGCTC GGTGCCTTGGATCCTAAGAAACCCGAGGGTTTGAATGAAGAGGTGATTGTAGACCTTGTTGATCAGTGCCGTGCTTATCAGACAAGGGTTAGGCTTCTTG TGAACGAGACAACAGATGAGGAACTTCTAGCACAAGGATTATCCCTCAACGACACCTTGCAGCGTGTCATTCGTCGCCATGATGACATTGCTAACAGAAC TGCTGCTGCTCAAGTTGTAGAGACGCAACGGGAGACGCAACAAGAGAATCCAATCGTGCCGCTTGTTAATGTTAACCGTGAAGATGATGATGATGAATCA GATGATGATCTCTCTCAGCTGGCTCGTAGATCATCCAGGGAACCCCCCTCGCAAGCACAAGGCCCGAAACCGGCCAGTGTCAGGACTCCGCCACGTGCCG TCTCTCCATTCCTCGCTCCGCCACCTTCATCAAAGAAGCCGGTGATCAACTCAGACACGGCAGACTACCTCAGTGGCGACTCATACATGTCCACCGGCAG AGATTACCCCCTCCACACGTCAGAACCAACACCCCGATCGGACCCACATTACTCCCCGCTCGAGTCCCCCACATCATCTCCACCACGGCCGCCGCCGCCT CCTCCTTTCCAACTTGTCTCTTGGTTCGTCTGCTGCAGCGAAGAAAAAGGACACGAAGCCGGAGGATGCGCTGTTTAA
AA sequence Show only first row Show all	>Lus10018948 pacid=23144731 polypeptide=Lus10018948 locus=Lus10018948.g ID=Lus10018948.BGIv1.0 annot-version=v1.0 MANNAAACAERATSDMLIGPDWAINIELCDIINLDPRQAKDALKVLKKRLGNKNSKTQLLALYALETVSKNCGENVFQQIVERDILRDMVKIVKKKPDLT VREKILSLIGTWQEAFGGPGGRYPQYYAAYNELRAAGFEFPLREDSGVAIFTPPQTQPIAHEPTYEDAAIQASLESDASGLSLLEIENARGLAEVLMEML GALDPKKPEGLNEEVIVDLVDQCRAYQTRVRLLVNETTDEELLAQGLSLNDTLQRVIRRHDDIANRTAAAQVVETQRETQQENPIVPLVNVNREDDDDES DDDLSQLARRSSREPPSQAQGPKPASVRTPPRAVSPFLAPPPSSKKPVINSDTADYLSGDSYMSTGRDYPLHTSEPTPRSDPHYSPLESPTSSPPRPPPP PPFQLVSWFVCCSEEKGHEAGGCAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	0	1
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	1.0	0.8364
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	4.2	0.8162
AT3G52710			unknown protein		Lus10022708 [exp]	5.0	0.8059
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	7.7	0.8090
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	12.4	0.7915
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	13.2	0.8001
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	14.5	0.8150
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	14.9	0.7743
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	15.4	0.7790
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	17.3	0.7965

Compare expression of checked genes

Lus10018948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.