Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 142 / 2e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 138 / 8e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 137 / 2e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 134 / 1e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 134 / 3e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 126 / 3e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 124 / 9e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G19590 122 / 4e-32 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G77330 120 / 1e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 119 / 2e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018950 [exp] 533 / 0 AT3G60290 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001460 [exp] 441 / 2e-156 AT2G36690 149 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011263 [exp] 229 / 3e-75 AT4G25420 50 / 2e-07 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001711 [exp] 152 / 3e-44 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 145 / 2e-40 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 144 / 1e-39 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 140 / 2e-38 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 134 / 8e-37 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 131 / 2e-35 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185000 [exp] 402 / 4e-141 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 192 / 2e-58 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 191 / 7e-58 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 152 / 2e-43 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 149 / 1e-41 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 144 / 3e-40 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 144 / 5e-40 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 143 / 8e-40 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 140 / 1e-38 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 137 / 1e-37 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018949 pacid=23144631 polypeptide=Lus10018949 locus=Lus10018949.g ID=Lus10018949.BGIv1.0 annot-version=v1.0 ATGGTTCAACAAGTTGCATCACTTGGCCTTACACTTATTCAATCATCATCACCAAATGAAGTTGAAGAAGTAGTGGATGAAGAGATTCCAACCATAGATT ACTTGTCCCTCTTCTCTCCGGATCCTATCAAGCGTTTTGGTGCTCTCACATGCCTGTCGATTGCCTGCGAAGACTATGGATTCTTCAACCTGGTGAACCA TGGGATTCCGGAGGAAGTGATGGAATGTGCATTGAGACGGATTGGGGAATTTTTTGAGGAGAATGATGTGGAGGAAAAGAGCAAGTATAGGAAAGGGGAT CCAAAGGCTAGGGTTCTTTGGGATACTAGGTGTCACGTTGGTGAGAATAGAGAGCATCTCAAGCTCCTTGCACGCCCACATTTACATTGCCCTCCTAATC CTCCGCCATTCAGAGAGGCTTTGGGAGATTACGTGACAAGATTCCACCAAGTGAAGCTAGGGCTAGCAAGAGCAATGTCGACGATCTTGGGACAAGAAGA GTCCTACATCGAGACAGCTTTCGATCTCGAGTCAGGTTTCGACGTGGCAGCAATGAACCGATACCCACCAAATTTCGAGTCGAAAGGAACCATGGGTTTG GCCGAACACACCGATCCGGGCTTCATCATCTCCCTAATACAAGACATGGACGGCGGCCTTCAAATCCTGACCCACCAAGGAAAATGGGTCGACGTCCATA TCCCTCGTAACGCGATCTTGATTCAGCTCGGCGACCAACTCGAGGTTCTGACGAATGGTAAGTACAAGAGTCACGTTCATAGAGTGTTGGTGGGTGGCTA CAAAGCTAGGAGGGTTTCGGTGGGGACACTCCACGGTCCATCTATCAACAAGTTTATGGCCCCGGCTCCGGAGTTTGTGCACAGTTCACGTCCTCCTGGT TATCGTGGGATGACCTACTCAGAATCTTTGGAAGCCAATGGCCGTTACGAGATTGAAGTCCAATCCTGCATCGAACAACTTAGACTTGTTTAA
AA sequence Show only first row Show all	>Lus10018949 pacid=23144631 polypeptide=Lus10018949 locus=Lus10018949.g ID=Lus10018949.BGIv1.0 annot-version=v1.0 MVQQVASLGLTLIQSSSPNEVEEVVDEEIPTIDYLSLFSPDPIKRFGALTCLSIACEDYGFFNLVNHGIPEEVMECALRRIGEFFEENDVEEKSKYRKGD PKARVLWDTRCHVGENREHLKLLARPHLHCPPNPPPFREALGDYVTRFHQVKLGLARAMSTILGQEESYIETAFDLESGFDVAAMNRYPPNFESKGTMGL AEHTDPGFIISLIQDMDGGLQILTHQGKWVDVHIPRNAILIQLGDQLEVLTNGKYKSHVHRVLVGGYKARRVSVGTLHGPSINKFMAPAPEFVHSSRPPG YRGMTYSESLEANGRYEIEVQSCIEQLRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	2.0	0.9056
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	5.7	0.9009
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	6.5	0.8977
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	6.6	0.8603
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	6.7	0.8806
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	7.3	0.8728
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	8.7	0.8854
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	12.0	0.8601
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	13.3	0.8683
					Lus10030114 [exp]	13.5	0.8454

Compare expression of checked genes

Lus10018949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.