Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60290 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 145 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 143 / 9e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 140 / 6e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 137 / 8e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G77330 125 / 2e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 124 / 9e-33 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 124 / 1e-32 ATSRG1, SRG1 senescence-related gene 1 (.1) AT2G30830 122 / 4e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 120 / 3e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018949 [exp] 537 / 0 AT2G44800 148 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001460 [exp] 448 / 2e-159 AT2G36690 149 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011263 [exp] 266 / 9e-90 AT4G25420 50 / 2e-07 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001711 [exp] 150 / 2e-43 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 152 / 6e-43 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 149 / 6e-42 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 144 / 3e-40 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 141 / 8e-39 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011979 [exp] 134 / 3e-36 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185000 [exp] 410 / 2e-144 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 196 / 7e-60 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 189 / 2e-57 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 161 / 7e-47 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 149 / 2e-42 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 148 / 7e-42 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 147 / 2e-41 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 144 / 2e-40 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.008G029700 [exp] 143 / 1e-39 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 142 / 1e-39 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018950 pacid=23144754 polypeptide=Lus10018950 locus=Lus10018950.g ID=Lus10018950.BGIv1.0 annot-version=v1.0 ATGGTTCAAGTTCATTCAACACAAGTACTGGAAGTAGTGGTGGATGAAGAGATCCCAACCATAGATTACTTCTCCCTCTTCTCCTCCGACCCTATCAAGC GGTTCGATGCACTCGCACGCCTCTCATCTGCCTGTGAAGACTACGGGTTTTTCAACTTGGTGAACCACGGGATACCGGATGAAGTGATGGAAGGTGCACT AAGCGGGATTGGAGACTTCTTCGAGAAGAGTGGTGTGGAGGAGAAGAGAAAGTATAGGAAAAGAGATCCAAAGGCTAGGATTCTTTGGGATGCCAGGTGT CATGCCGGCGAGAATAGGGAACATCTTAAACTACTCGCTCGTCCTAAGCTCCATTGCCCTCCTAATCCTCCGTCTTTTAGGAAGGCTTTGGGAGATTACG TGACCAAGTTCCACCAAGTGAAGCTAGGGCTAGCAAGAGCAATGTCCACGATCTTGGGACAAGAGGAGTCCTACATCGAGACAGCTTTCGATCTTGAGTC AGGCTTCGACGTGGCAGCAATGAATCGATACCCACCGAATTTCGAGTCGAATGGAACCATGGGTTTGGCCGAACACACCGATCCGGGATTCATCATCTCC CTTATACAAGACATGGACGGCGGACTTCAAATCCTGACCCACCAAGGAAATTGGGTCAACGTCCATATCCCTTGTAATGCCATCTTAATTCAGCTTGGCG ACCAACTTGAGGTTCTAACGAATGGCAAGTACAAAAGTCACATTCACCGTGTGTTGGTAGGTAGCTACAAGACTAAGAGGATTTCCTTAGGCACGCTTCA TGGACCATCCATCGACAAATTCGTGGCTCCCGCTCTAGAGTTTGTTGACGAGACTCGTTGTTCGGGTTACCTTGGAATGACTTACTCTGGAGCTTTGGAA GCTAATGATCGTTATGAGATTGAAGTCCAATCGTGCATCGAACAACTTAGAAAGATCATCTGA
AA sequence Show only first row Show all	>Lus10018950 pacid=23144754 polypeptide=Lus10018950 locus=Lus10018950.g ID=Lus10018950.BGIv1.0 annot-version=v1.0 MVQVHSTQVLEVVVDEEIPTIDYFSLFSSDPIKRFDALARLSSACEDYGFFNLVNHGIPDEVMEGALSGIGDFFEKSGVEEKRKYRKRDPKARILWDARC HAGENREHLKLLARPKLHCPPNPPSFRKALGDYVTKFHQVKLGLARAMSTILGQEESYIETAFDLESGFDVAAMNRYPPNFESNGTMGLAEHTDPGFIIS LIQDMDGGLQILTHQGNWVNVHIPCNAILIQLGDQLEVLTNGKYKSHIHRVLVGSYKTKRISLGTLHGPSIDKFVAPALEFVDETRCSGYLGMTYSGALE ANDRYEIEVQSCIEQLRKII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	0	1
					Lus10021406 [exp]	1.4	0.9818
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	1.7	0.9765
					Lus10021407 [exp]	2.8	0.9807
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	2.8	0.9751
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	4.2	0.9584
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	4.5	0.9728
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	6.5	0.9550
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	6.6	0.9382
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	6.7	0.9533
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	6.9	0.9536

Compare expression of checked genes

Lus10018950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.