Plant FIBer expression Database

Lus10018951 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64680 72 / 2e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011265
[exp]
315 / 9e-110 AT5G64680 67 / 3e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G068500
[exp]
151 / 8e-46 AT5G64680 90 / 5e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10018951 pacid=23144752 polypeptide=Lus10018951 locus=Lus10018951.g ID=Lus10018951.BGIv1.0 annot-version=v1.0
ATGGCCGAGGAGGAAGAGCTGCCGGCGTACCAGCCTGGTCCTGGATTCGAGCAGGATTCACGAGAGCAGCTCGTCGATATCGGTCCCGCCATCTCTAGCT
CAACGGAGCTTTGGCTTATCCAGTGGCCGCATAACGATCTTCCTAATATCCATGGCAAGGAACTTTCCATCAGTCTGGATAGCAATGGTTGCTCGGCAAG
CTTCGAGGATTTATCAGGGAAGATGTACGAGATAGTCGGAACTGATCAAGAGCAAGGTCCATCAGTCTTCATGTCTTCTGTATCAGAAACTGAAATTGTT
GGGAACATTTCTCGCCGGGTTTCCCTCGTACACTACCCTGATCCAAAAGAGCTAGAGCAGAGAGACGCAGCAAAGAAGTCGAAGCGGCTGCACCTTATGA
CTTCCAGTTCTTCAATGAAAAACTCTTCACAGCGAAGTAGCAGTAAGATGACGAAATCAAGGGGGCCAGGTGCATCAACTTATAGTAACAGGGATGGGTC
AGGTTCTTCTGCAAGAAGGCAAACACCAACACAAACACACCGGGGCTCTGCATCGAAGGGCGGAAGATCCTCTATGGACTCCAAACAACGCCACAACAAT
TCGACCGACCTTTCAGGTCCTTCAGGCGTTGAAGGGTAG
AA sequence
>Lus10018951 pacid=23144752 polypeptide=Lus10018951 locus=Lus10018951.g ID=Lus10018951.BGIv1.0 annot-version=v1.0
MAEEEELPAYQPGPGFEQDSREQLVDIGPAISSSTELWLIQWPHNDLPNIHGKELSISLDSNGCSASFEDLSGKMYEIVGTDQEQGPSVFMSSVSETEIV
GNISRRVSLVHYPDPKELEQRDAAKKSKRLHLMTSSSSMKNSSQRSSSKMTKSRGPGASTYSNRDGSGSSARRQTPTQTHRGSASKGGRSSMDSKQRHNN
STDLSGPSGVEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64680 unknown protein Lus10018951
[exp]
0 1
AT5G48870 SAD1 SUPERSENSITIVE TO ABA AND DROU... Lus10011877
[exp]
5.9 0.8781
AT3G10090 Nucleic acid-binding, OB-fold-... Lus10016222
[exp]
6.6 0.8927
AT4G37280 MRG family protein (.1) Lus10019312
[exp]
6.7 0.8372
AT3G08980 Peptidase S24/S26A/S26B/S26C f... Lus10002492
[exp]
11.4 0.7993
AT3G07590 Small nuclear ribonucleoprotei... Lus10028022
[exp]
14.0 0.8652
AT1G34030 Ribosomal protein S13/S18 fami... Lus10014676
[exp]
14.1 0.8899
AT4G13720 Inosine triphosphate pyrophosp... Lus10011757
[exp]
14.3 0.8659
AT1G41880 Ribosomal protein L35Ae family... Lus10028254
[exp]
15.9 0.8864
AT5G63010 Transducin/WD40 repeat-like su... Lus10039042
[exp]
17.4 0.8642
AT4G14320 Zinc-binding ribosomal protein... Lus10010195
[exp]
18.9 0.8806

Lus10018951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.