Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011266 [exp] 602 / 0 ND / Lus10018943 [exp] 280 / 3e-88 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10036475 [exp] 114 / 6e-28 ND / Lus10010342 [exp] 113 / 1e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G076200 [exp] 521 / 0 ND / Potri.002G100700 [exp] 114 / 7e-28 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01702 [flax] [poplar] TGT Queuine tRNA-ribosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018952 pacid=23144632 polypeptide=Lus10018952 locus=Lus10018952.g ID=Lus10018952.BGIv1.0 annot-version=v1.0 ATGAAGTTCACAGTGAAAACATTGAGCAATGGGAAAGAACGAGTTGGGAAGCTTCAACTTGGAAGCTGTCCATCCCCAATCGAGACGCCTGCTCTTCTCA TCGCCACTCGTAAAGGGCTCCCTCTATTTGTGTCCCCGGACCTCCTCCCGGATCTTCCTTATCCCGACTCCGGTCTTCTCCATGTTAGCCCACTCCACTT TTTGGATACCATGTCACTGAAAATGATATCGAACCTGGGAGGCCTGAATCAAATGCTAGGATTGAACTCGCATGCTTTCGCTGCTGTTGCAAGGGATTCC GTTCAATGCCTTCCAGAGTTCAATAGCAGCAATAAACTCGGAGCATCTTTCGAGACTCCAAGTGGAAGGCGACTGGTTAGTGCTGCTGAGTATATGGAAT TCATCTGTTCCCTAAAGCCGGATTTGTGGGCGACCTTGGCTGATGAAGTACCTGCATGGGTATCTGATGTTAGGAACCGGACTTCTGTAGATCGAACTGT GAAATGGCTCGATGAGTGCATATCCCGCAGCCCGGCAAGTGGAGCAGTTTTTGGAGCTATTGTTGGAGGTTCTGATAAAGAGCAGAGGAAAAGATGTGCC ATAGAAGTCTCCAAGAGAAACGTATCAGGATTTGGTTTTGGAGAGAGCATGGATGATCGCCCTGCTTTGCTTAAGACAGTGACTGATAATCTACCAGAAG AAAGACCTCGTCTCGTCTCTGGGCTTGGTCTACCAGAGGAGGTGCTGCAAGGTGTTGCTGCTGGAATCGATCTTTTCGACTCATCGTATATATACCACCT AACGCTTGGAGGCTTTGCACTGACCTTCCCTTTAGACGTCCTTGGATTAGCTGAAGAATTTCCTGCGAAATGTATCGAAACCGATTCGAGCAAGATCAAT CTTAAAGCAACCGTGTACAGGAAAGACACAGCCGCTATTGTCGAAGGATGTCTATGCTACACATGCCAGAATCACACCAGAGCTTACATCAACCACCTCC TTAACGTCCACGAAATGCTGGCTCAGATTCTCCTCGAAATACACAACACACACCACTACCTGGGGTTCTTCAAATCGATCAGGAATTCGATCAAGGACGG CAAGTTCGAGCAGTTCTGTCAGATATTCCTCCGGAGCCGCCGCGATCATCTCGCTTCCCCCGCCATCAGCGCATGA
AA sequence Show only first row Show all	>Lus10018952 pacid=23144632 polypeptide=Lus10018952 locus=Lus10018952.g ID=Lus10018952.BGIv1.0 annot-version=v1.0 MKFTVKTLSNGKERVGKLQLGSCPSPIETPALLIATRKGLPLFVSPDLLPDLPYPDSGLLHVSPLHFLDTMSLKMISNLGGLNQMLGLNSHAFAAVARDS VQCLPEFNSSNKLGASFETPSGRRLVSAAEYMEFICSLKPDLWATLADEVPAWVSDVRNRTSVDRTVKWLDECISRSPASGAVFGAIVGGSDKEQRKRCA IEVSKRNVSGFGFGESMDDRPALLKTVTDNLPEERPRLVSGLGLPEEVLQGVAAGIDLFDSSYIYHLTLGGFALTFPLDVLGLAEEFPAKCIETDSSKIN LKATVYRKDTAAIVEGCLCYTCQNHTRAYINHLLNVHEMLAQILLEIHNTHHYLGFFKSIRNSIKDGKFEQFCQIFLRSRRDHLASPAISA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018952 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	1.4	0.8793
AT5G63040			unknown protein		Lus10027687 [exp]	13.6	0.8547
AT1G32420			F-box and associated interacti...		Lus10011210 [exp]	14.9	0.7642
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	15.1	0.8300
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	25.5	0.8342
					Lus10020157 [exp]	31.0	0.8526
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10034669 [exp]	31.8	0.8288
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	50.2	0.7632
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	53.2	0.7769
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	61.0	0.8208

Compare expression of checked genes

Lus10018952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.