Plant FIBer expression Database

Lus10018953 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011269
[exp]
50 / 1e-07 ND /
Lus10043191
[exp]
47 / 1e-05 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10018953 pacid=23144694 polypeptide=Lus10018953 locus=Lus10018953.g ID=Lus10018953.BGIv1.0 annot-version=v1.0
ATGCTTGGAATTGCTGTAGGAGTTGGAGGTGGGAGGACGAAAGGCAAAGAGAGAGTCGTATATAAAAAGGATAAGGGAAAAAAGAAGGTTGTTAAAGATG
ATCCTACCGCATCCTCAACAATGGGAGTTTACGGCAAAACGGTTTCATTTGATTTGAACAAGCGTCGTGGTCTACGAAGGATTGATACTGACATAATTCG
CTCCCTCATCAGAAATCAAGGAAGGAGAGAGGAACTCGGCAGCCACCTTACTTATAATAAGCTTATCCTCCTCTTGAAACAGATCATCTGTCGTATCGGC
ATTGGGAGTCCCCGGAGTAGGGGTTTCAGGGAGACCGGAAACAGAGCACAACTACTGAAAGCACACCTCCTGGACCAAACGACCACCATCTTTGGATTCC
GGCCGAAAAGCGTTCAACTGAATATCACCGATCACGGAGCATACGGTGCAATGCCTCTGGACACATTATCTCGCGCACCAAACACCTCCTCGGAATATAC
TGTGGACATAAGCCAGGGGAGGAGAAACAACCAAATGCCATGCTTCACGCTATTCTATTGCGGCAGTAGGGGCGAATGTTTGCTATTGTTCTTCATGACA
TTCGAATGCTACAATCCAGGATCGAAAAATTACGTGAATATTTGGCAAGCTATGGTGTCCTACTTCTTGAACCACCTCAAGAAACCTCGGGTCACGAGGA
TAACGAATAATGATAAAGATGAAGATCTGTTATCACCGAATGAACGCCACGTGTCAAAAGGAAAGAGAGCCAAAAGGTTAGACATGTGGAGGGATGTTCA
ACATTAG
AA sequence
>Lus10018953 pacid=23144694 polypeptide=Lus10018953 locus=Lus10018953.g ID=Lus10018953.BGIv1.0 annot-version=v1.0
MLGIAVGVGGGRTKGKERVVYKKDKGKKKVVKDDPTASSTMGVYGKTVSFDLNKRRGLRRIDTDIIRSLIRNQGRREELGSHLTYNKLILLLKQIICRIG
IGSPRSRGFRETGNRAQLLKAHLLDQTTTIFGFRPKSVQLNITDHGAYGAMPLDTLSRAPNTSSEYTVDISQGRRNNQMPCFTLFYCGSRGECLLLFFMT
FECYNPGSKNYVNIWQAMVSYFLNHLKKPRVTRITNNDKDEDLLSPNERHVSKGKRAKRLDMWRDVQH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018953
[exp]
0 1
AT1G11060 WAPL (Wings apart-like protein... Lus10005857
[exp]
7.8 0.7818
AT1G29630 5'-3' exonuclease family prote... Lus10004608
[exp]
16.2 0.7246
AT2G39260 binding;RNA binding (.1) Lus10023481
[exp]
28.2 0.7334
Lus10012594
[exp]
47.4 0.7303
AT3G02100 UDP-Glycosyltransferase superf... Lus10003452
[exp]
51.6 0.6995
AT3G52030 F-box family protein with WD40... Lus10005328
[exp]
52.9 0.7249
AT2G06040 unknown protein Lus10033320
[exp]
66.5 0.7124
AT2G45620 Nucleotidyltransferase family ... Lus10009310
[exp]
76.2 0.7198
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Lus10043135
[exp]
79.5 0.7030
AT3G18730 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetr... Lus10035746
[exp]
86.4 0.7008

Lus10018953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.