Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29470 1035 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 1010 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 1009 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 894 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 628 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 592 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 556 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 517 / 2e-174 Putative methyltransferase family protein (.1) AT1G77260 504 / 1e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 504 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028650 [exp] 1504 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 1247 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 1227 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 962 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 873 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 868 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 843 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 837 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 830 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184500 [exp] 1133 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 1118 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 1008 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 979 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 892 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 876 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 627 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 568 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 508 / 3e-171 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 501 / 3e-168 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018954 pacid=23144680 polypeptide=Lus10018954 locus=Lus10018954.g ID=Lus10018954.BGIv1.0 annot-version=v1.0 ATGGCGACAGGGAAGTATTCGCGAGTAGATGGCAGGAAATCGTCGAACTATTGCTCGACGATCAGCGTTGTTGCGTTCGTTGCGTTGTGTTTAGTCGGGA TTTGGATGTTCATGTCATCAACTGATGTCAACCCCGAACCGGTTGTGGATGTGCCGTCTTCTCAGGAAACTGCTAGTCATGGTAAACAAAGCATTGCTGA GAGTGGTGATTTGCCAGAGGGTGCAAGCAAAGAGGTCGAGAACAACACCGAAGACAATTCCAATGGTGATAGCCAACCAGATGTCCAGGACGAAAGCAAG GTGAAAGAGACTGAGACCGTGTCTAATCAAGGTGCAAAGGCCGAGGAGCCTCGAGAAGAGTCAAATGAAGATGGGACAAAGAAGGATGGAAATGATGAAA AGACCGAGCTGCCTGGATCGGAGGATGGTTCAAGTGATAAATCGGTGTCAAACGAAGGGGAGAACAAGCCCACAGATGATTCAAATGAGGATAAGAACGG AAGCGAGAGCGAGACTGAGGGTAGTTCGGACGAGGGGGATAGTAAGCCTACAGAAGAAGGTGCAAATGATAATCAAGGTAAAGAAAAGGCAGCTGAGGTT TTCCCTGCTGGTGCTCAGTCTGAGCTTCTGCACGAGACGAATACACAGAATGGGGCTTTTTCGACTCAAGTTGCAGAGTCTCAGAAGGAGAAGAAAGTTC AAGAATCGTCGGAGAATGCTAAACAAGACGATGCTCAAGCATGGAAACTATGCAACACTACTGCCGGTCCGGATTACATTCCTTGCCTTGACAACTGGCA AGCGATCAGGAAGCTTCCAAGCACCAAGCATTACGAACATCGTGAGAGGCATTGCCCTGATCAAGCACCTACGTGCGTTGTTCCCATGCCTGAAGGATAT AAGAAATCCATCAAGTGGCCTAACAGCAGGGATAAGATCTGGTATTACAATGTTCCCCATACCAAGCTCGCCGAGATCAAAGGACATCAAAACTGGGTGA AAGTAACTGGCGAATATCTTACGTTTCCAGGTGGTGGGACTCAGTTCAAGCATGGAGCCCTTCATTACATCGATTTCATCCAGGAATCCCTTGCAGACAT TGCTTGGGGGAAAAGGAGCCGTGTGATATTGGATGTTGGATGTGGTGTGGCCAGCTTTGGTGGTTATCTTTTCGATCGGGATGTTCTTGCCATGTCGTTT GCTCCCAAAGACGAGCATGAAGCTCAGGTTCAATTCGCGCTAGAGCGTGGAATTCCCGCCACATTGGCTGTTATGGGCACCAAGAGGCTGCCATTCCCGG GTTACGTCTTTGATCTGGTCCACTGTGCACGTTGCAGGGTTCCTTGGCATATCGAAGGCGGTAAGCTTCTTTTGGAGTTGAATCGCGTGTTGCGACCCGG TGGCTACTTTGTGTGGTCTGCCACTCCTGTTTATCAAAAGCTGCAAGAGGACGTCGAGATCTGGGAAGAGATGTCCAAGTTGACAAAGGCTATGTGCTGG GAGCTTATCGTGATCAAGAAAGATGCTCTGAACGGTGTTGGTGCTGCGATATACAGAAAGCCGTCTTCCAACGAATGCTACAATCAGCGAACCACGAGTG AGCCGCCACTGTGCAAAGAATCCGACGATCCAAACGCAGCTTGGAACGTGCCGCTTGAGGCGTGTATGCATAGAGTCCCCGAGGACGAATCTGTCCGTGG AGCTAAGTGGCCCGAGCAGTGGCCACAGAGGTTGGAGAGTCCACCGTACTGGTTGAAATCGCAGGTCGGAGTTTACGGGAAAGCTGGCCAGGAAGACTTT GTTGCTGACTACAACCACTGGAAGAACGTCGTCTCGCAATCGTACCTTAACGGAATGGGCATCAACTGGGGCTCTGTAAGGAATGTCATGGATATGAGAG CTGTCTATGGAGGGTTCGCGGCTGCATTGAAGGACATGCAAGTGTGGGTTATGAACGTCGTCCCAATCGATTCTCCCGACACTCTCCCCATAATCTACGA GCGTGGTTTGTTCGGAATGTATCACGATTGGTGCCAGTCGTTCAACACCTACCCCAGAACCTACGATGTCCTTCACGCGGATCATCTTCTCTCCATCATT AAAAAGAGGTGTAGCCTAGTGGGAGTGATTGCAGAGGTGGACAGGATCCTGAGGCCGGAAGGGAAGCTGATTTTACGAGACAACGTGGAAACGATAATCG AGGTCGAGAAGCTGGCGAAATCGCTGCACTGGAACGTACGGATGATCTACTCGAAGGAAGGTGAAGGGTTGGCGCGCATCGAAAAGACGATGTGGCGCCC GACCGAGGTTCAGTTGGTGGCCTCGGCCATCATGTAA
AA sequence Show only first row Show all	>Lus10018954 pacid=23144680 polypeptide=Lus10018954 locus=Lus10018954.g ID=Lus10018954.BGIv1.0 annot-version=v1.0 MATGKYSRVDGRKSSNYCSTISVVAFVALCLVGIWMFMSSTDVNPEPVVDVPSSQETASHGKQSIAESGDLPEGASKEVENNTEDNSNGDSQPDVQDESK VKETETVSNQGAKAEEPREESNEDGTKKDGNDEKTELPGSEDGSSDKSVSNEGENKPTDDSNEDKNGSESETEGSSDEGDSKPTEEGANDNQGKEKAAEV FPAGAQSELLHETNTQNGAFSTQVAESQKEKKVQESSENAKQDDAQAWKLCNTTAGPDYIPCLDNWQAIRKLPSTKHYEHRERHCPDQAPTCVVPMPEGY KKSIKWPNSRDKIWYYNVPHTKLAEIKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESLADIAWGKRSRVILDVGCGVASFGGYLFDRDVLAMSF APKDEHEAQVQFALERGIPATLAVMGTKRLPFPGYVFDLVHCARCRVPWHIEGGKLLLELNRVLRPGGYFVWSATPVYQKLQEDVEIWEEMSKLTKAMCW ELIVIKKDALNGVGAAIYRKPSSNECYNQRTTSEPPLCKESDDPNAAWNVPLEACMHRVPEDESVRGAKWPEQWPQRLESPPYWLKSQVGVYGKAGQEDF VADYNHWKNVVSQSYLNGMGINWGSVRNVMDMRAVYGGFAAALKDMQVWVMNVVPIDSPDTLPIIYERGLFGMYHDWCQSFNTYPRTYDVLHADHLLSII KKRCSLVGVIAEVDRILRPEGKLILRDNVETIIEVEKLAKSLHWNVRMIYSKEGEGLARIEKTMWRPTEVQLVASAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	2.2	0.9325
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	4.1	0.8658
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	4.9	0.8820
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	4.9	0.9118
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	5.7	0.9082
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	6.5	0.8876
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	9.0	0.8753
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	9.5	0.8281
AT4G18593			dual specificity protein phosp...		Lus10018112 [exp]	11.6	0.8165
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	11.7	0.8883

Compare expression of checked genes

Lus10018954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.