Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21510 90 / 1e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028651 [exp] 389 / 4e-137 AT1G21510 104 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076200 [exp] 134 / 2e-37 AT1G21510 96 / 1e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018955 pacid=23144746 polypeptide=Lus10018955 locus=Lus10018955.g ID=Lus10018955.BGIv1.0 annot-version=v1.0 ATGGGTTGCTGCATGAGCTCTGAAACCAAGCTCAGAACCAAACCCCATTACTCCTCACAAGAACTCTTCCATGTCCAAGACAAGCTAGTCATCTCCCAAC AACCTCCGCCGCCAATCCGCCATTATCATTCCAGAAGAATCTCCCCCGTCTTCCCTCTTTCCCCCACCCATTCCTCTTCTTCCTTCTCTCGCCGCTGCGG TGACAGCGAATCCTCCTCCTCCTCAGTGTTGACGTCGAAAGACCGGTCCTTCTCCAACGAATTCCTCTGGTCATGCCTCAAGGAGAATCCCCATGTCATG TATTTAGATTCCATCAAGGAATATTCCTCCACCGCCAAGCTAGCCGCAGACTCCCCTGTTCCGAAACAGGGGATTGAAAAACAGAGTATGGTGCAGAATG CGATCTCGCGATCAAATTCCCAGAAACGTATCCGGTCCAGCTCGCCGAGTAATCTGAACCGGCAGAAGAGCTTCCAGAAGGAGTATTCGGACGAGATTTT GATCCGGTCTCCGTCTCCGAGTAGGAGATTCGCCAATTGGGAGAGCTGGAGCAGGGGAATTTCATCCATTTCGACCGGGAACGACAATGAGAGCTATAAT TCGAAGCGAGTGATGGGTGTGAAGGCGAATGCTTCTAGGCATGTGAAGAGAGATGAATTGAATTCTCCGGCGCCGGCACCGGCGAGTGTGGTGAGGAAGA AGAGGAATAGGGAGACTTTGGTGCACAGGATAAGCTCGAAAATCGACGAGTCGGTGGTGGCGGAAGCGATGGCGAGGTATGAAGGAGAGTGTGCTGCGAT GGAGGAAGACATTAACAACCCGATGATTTCGTTGGATTGCTTCATTTTTCTTTGA
AA sequence Show only first row Show all	>Lus10018955 pacid=23144746 polypeptide=Lus10018955 locus=Lus10018955.g ID=Lus10018955.BGIv1.0 annot-version=v1.0 MGCCMSSETKLRTKPHYSSQELFHVQDKLVISQQPPPPIRHYHSRRISPVFPLSPTHSSSSFSRRCGDSESSSSSVLTSKDRSFSNEFLWSCLKENPHVM YLDSIKEYSSTAKLAADSPVPKQGIEKQSMVQNAISRSNSQKRIRSSSPSNLNRQKSFQKEYSDEILIRSPSPSRRFANWESWSRGISSISTGNDNESYN SKRVMGVKANASRHVKRDELNSPAPAPASVVRKKRNRETLVHRISSKIDESVVAEAMARYEGECAAMEEDINNPMISLDCFIFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21510			unknown protein		Lus10018955 [exp]	0	1
AT1G21510			unknown protein		Lus10028651 [exp]	1.7	0.9783
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	4.5	0.9568
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10037202 [exp]	6.9	0.9526
AT5G61340			unknown protein		Lus10034727 [exp]	7.1	0.9650
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	9.9	0.9636
AT5G61340			unknown protein		Lus10021641 [exp]	10.6	0.9614
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036111 [exp]	11.2	0.9517
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	12.4	0.9372
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	12.6	0.9360
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	12.7	0.9531

Compare expression of checked genes

Lus10018955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.